Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   B18_RS28860 Genome accession   NZ_CP058332
Coordinates   6222810..6223139 (-) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B18     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6217810..6228139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B18_RS28845 (B18_28700) uvrB 6219197..6221209 (-) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene
  B18_RS28850 (B18_28705) - 6221397..6222593 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  B18_RS28860 (B18_28715) comEA/comE1 6222810..6223139 (-) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  B18_RS28865 (B18_28720) - 6223330..6225327 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  B18_RS28870 (B18_28725) - 6225340..6226365 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  B18_RS28875 (B18_28730) - 6226466..6227410 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=405081 B18_RS28860 WP_023109812.1 6222810..6223139(-) (comEA/comE1) [Pseudomonas aeruginosa strain B18]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=405081 B18_RS28860 WP_023109812.1 6222810..6223139(-) (comEA/comE1) [Pseudomonas aeruginosa strain B18]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment