Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM46_RS02070 Genome accession   NZ_CP046525
Coordinates   402274..404250 (+) Length   658 a.a.
NCBI ID   WP_235083839.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 397274..409250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS02060 (GOM46_02045) - 399428..401530 (+) 2103 WP_235083836.1 AAA family ATPase -
  GOM46_RS02065 (GOM46_02050) - 401586..402068 (-) 483 WP_235083837.1 S-ribosylhomocysteine lyase -
  GOM46_RS02070 (GOM46_02055) amiA 402274..404250 (+) 1977 WP_235083839.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS02075 (GOM46_02060) pbp1a 404328..406472 (-) 2145 WP_235083840.1 penicillin-binding protein PBP1A -
  GOM46_RS02080 (GOM46_02065) recU 406465..407064 (-) 600 WP_235083841.1 Holliday junction resolvase RecU -
  GOM46_RS02085 (GOM46_02070) - 407132..407659 (+) 528 WP_235083842.1 DUF1273 domain-containing protein -
  GOM46_RS02090 (GOM46_02075) gpsB 407729..408064 (+) 336 WP_321159627.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 73005.37 Da        Isoelectric Point: 4.5733

>NTDB_id=405053 GOM46_RS02070 WP_235083839.1 402274..404250(+) (amiA) [Streptococcus infantis strain SO]
MKFSKVMALAGVTLLASGVLAACSGSSAKGGNTFSYVYETDPDNLNYLTTGKAATANITSNVIDGLMENDRYGNFVPSMA
EDWSVSQDGLTYTYTIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADNKSEALYLVQDSIKGLDAYVKGEVKDFSEVGIK
AIDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLTSKGSDFAKATDPSSILYNGPFLLKSLVAKSSVEFEKNPNYWDKD
NVHIDKVKLSFWDGQDNNKLAETFKDGGFSMARLFPTSASYPELEKEFKDNIVYTPQDSSTYLIGTNIDRQSYKYTSKTT
DEQKTSTKKALLNKDFRQALAFGFDRTAYASQVNGESGATKLLRNLFVPPTFVQADGKNFGDLVKEKLVTYGDEWKDVNL
DDAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTSTTKVQRVQSLKQSLEATLGADNVVIDIQQLQKDEVLN
VTYFAETAAGEDWDLSDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGNENTDI
SKRYDKYAAAQAWLTDSALIIPTTSQTGRPMLSKMVPYTLPFAYSGNKGTSEALLYKYLELQDKPVTADEYQKAQDKWKK
EKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=405053 GOM46_RS02070 WP_235083839.1 402274..404250(+) (amiA) [Streptococcus infantis strain SO]
ATGAAATTTTCAAAAGTAATGGCCCTAGCAGGGGTGACTCTGTTAGCGTCAGGTGTTTTGGCAGCTTGTTCAGGTTCGAG
CGCAAAAGGTGGAAATACGTTTTCTTACGTGTATGAAACTGACCCAGACAACCTCAACTATTTGACAACTGGTAAAGCTG
CAACTGCTAATATCACTAGTAACGTCATCGATGGTTTGATGGAAAATGACCGCTACGGAAACTTTGTGCCATCAATGGCA
GAAGACTGGTCTGTATCTCAAGATGGTTTGACTTATACCTATACAATTCGTAAAGATGCTAAATGGTATACTTCTGAAGG
TGAGGAGTACGCAGCTGTGAAAGCTCAAGACTTTGTAACAGGTCTTAAATATGCAGCTGATAATAAATCAGAAGCCCTTT
ATCTCGTCCAAGATTCTATTAAGGGTCTGGATGCATATGTGAAAGGTGAAGTTAAAGACTTTTCTGAAGTTGGAATCAAG
GCAATTGATGATCAGACAGTTCAATACACTTTGAACAAACCTGAAAGCTTCTGGAACTCTAAAACAACTATGGGTGTTCT
TGCACCGGTCAATGAAGAATTCCTTACTTCAAAAGGAAGTGACTTTGCCAAAGCAACTGATCCAAGCAGTATCCTTTATA
ATGGTCCTTTCTTGTTGAAATCATTGGTAGCTAAATCTTCAGTAGAATTTGAAAAAAATCCAAACTACTGGGATAAGGAC
AATGTTCATATTGATAAAGTAAAACTTTCATTCTGGGATGGTCAAGACAATAACAAACTTGCAGAAACCTTTAAAGATGG
TGGTTTCTCAATGGCTCGTCTCTTCCCAACCAGTGCAAGTTATCCTGAACTTGAAAAAGAATTTAAAGACAATATTGTTT
ATACACCTCAAGATTCTTCAACTTACTTAATTGGTACCAATATTGATCGTCAGTCTTACAAGTACACTTCTAAGACTACA
GATGAACAAAAGACATCAACTAAAAAAGCTCTCCTTAACAAAGACTTCCGTCAAGCCCTTGCTTTTGGTTTTGACAGAAC
AGCTTATGCTTCTCAAGTAAACGGAGAAAGTGGAGCAACAAAACTTCTTCGTAACTTGTTCGTACCACCAACATTTGTTC
AAGCAGATGGTAAAAACTTTGGTGATTTAGTCAAAGAAAAATTGGTAACTTATGGTGACGAGTGGAAAGATGTCAATCTG
GATGACGCTCAAGACGGTCTTTACAACCCTGAAAAAGCAAAAGCAGAATTTGCTAAAGCTAAGACAGCTCTTCAAGCAGA
AGGTGTTCAATTCCCAATTCACTTGGATATGCCTGTTGACCAAACAAGTACTACAAAAGTACAACGTGTTCAATCATTAA
AACAATCACTTGAAGCAACATTAGGAGCTGACAATGTTGTCATTGACATTCAACAACTTCAAAAAGATGAAGTCTTAAAT
GTTACCTACTTTGCTGAAACAGCTGCTGGAGAAGATTGGGATCTTTCAGATAACGTTGGTTGGTCACCAGACTATATCGA
CCCATCTACTTACCTTGATATCATCAAACCGTCTGTAGGTGAAAATACTAAGACTTATCTAGGATTTGATTCTGGTACAA
ACAACGCCGCTGCCAAACAAGTTGGTTTGGAAGATTACGAAAAGATGGTTGTTGAAGCCGGAAACGAAAACACTGATATT
TCAAAACGTTATGATAAATATGCTGCAGCTCAAGCTTGGTTGACAGATAGTGCATTGATTATTCCAACAACTTCTCAAAC
TGGACGTCCAATGTTGTCTAAGATGGTGCCATACACACTTCCATTTGCTTACTCAGGTAACAAAGGAACAAGTGAAGCCC
TCTTGTACAAATACCTTGAACTTCAAGATAAACCAGTAACTGCTGATGAATATCAAAAAGCTCAAGATAAATGGAAGAAA
GAAAAAGAAGAATCTAATAAAAAAGCGCAAGAAGATCTTGCAAACCATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

61.153

100

0.612
  amiA3 Streptococcus thermophilus LMD-9

60.85

100

0.609
  amiA3 Streptococcus thermophilus LMG 18311

60.395

100

0.605

Multiple sequence alignment