Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM47_RS08115 Genome accession   NZ_CP046524
Coordinates   1613690..1615657 (-) Length   655 a.a.
NCBI ID   WP_235080482.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608690..1620657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08100 (GOM47_08095) cps4B 1609203..1609934 (-) 732 WP_235080479.1 capsular polysaccharide biosynthesis protein Cps4B -
  GOM47_RS08105 (GOM47_08100) - 1609936..1611381 (-) 1446 WP_235080480.1 LCP family protein -
  GOM47_RS08110 (GOM47_08105) amiA3 1611573..1613534 (-) 1962 WP_235080481.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS08115 (GOM47_08110) amiA 1613690..1615657 (-) 1968 WP_235080482.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS08120 (GOM47_08115) - 1615826..1617436 (-) 1611 WP_235080483.1 glycoside hydrolase family 13 protein -
  GOM47_RS08125 (GOM47_08120) - 1617589..1619073 (+) 1485 WP_235080484.1 DUF1846 domain-containing protein -
  GOM47_RS08130 (GOM47_08125) - 1619208..1620239 (-) 1032 WP_235080485.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72379.95 Da        Isoelectric Point: 5.0691

>NTDB_id=405008 GOM47_RS08115 WP_235080482.1 1613690..1615657(-) (amiA) [Streptococcus oralis strain SOT]
MRSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAIDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLLQDSIKGLAAYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSSILYNGPYLLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKAELQAKGVTFPIRLDVPVEQTDVIAVQQTNSLKQSIESTLGTENVIVDVLQMTDNEKM
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=405008 GOM47_RS08115 WP_235080482.1 1613690..1615657(-) (amiA) [Streptococcus oralis strain SOT]
ATGAGATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCGGCCCTTCTGTTAACCGCTTGTGGGCAAAGCGA
AAAAAAGGCTGATGCTCCCAAGACATTTTCTTATGTCTATGCAATAGATCCATCATCTTTGGACTACAGCGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCCAACGTTGTCGATGGCCTCTTGGAAAATGATAAATACGGGAACTTGATTCCGTCG
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGATTGACCTATACCTACAAACTTCGTAAGGGTGTGAAATGGTATACTTC
TGAGGGAGAAGAATACGCTGAAGTCAAGGCTCAAGACTTTGTTACAGGTCTGAAACACGCAGCTGACGGTAAATCAGACG
GCTTATCCCTCCTTCAAGACTCTATCAAAGGTTTGGCTGCCTACATCAGTGGAGAAAGCAATGACTTTTCTACTGTAGGA
GTCAAGGCTGTTGATGATTACACGGTTGAATACACGCTTAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACAACTGC
TACCATGCTTCCAGTTAATGAAGAATTCTTGAATTCTAAAGGGAGCGACTACGGTGCGCCAACACCATCAAGCATCCTTT
ATAACGGTCCTTACCTTTTGAAATCCTTGACTTCAAAATCAGTCATCGAATATGAAAAGAATCCAAACTACTGGGACAAG
GACAATGTTAAGATTGACAACATCAAACTAACCTTCTATGATGGTTCCGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCTCGTCTGTTCCCAACAAGCTCAAACTTTGAATCAACTAAAAAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAGTCTTACAATAAAACAGCTAAAACA
GACGAGGCTCAAAAAACATCAACAAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCACTGAACTTTGCCCTTGACCG
TCACTCTTACACTGCTCAGTTGAATGGTGAAGAAGGTGCGGACAAGATTATCCGTAATAGCCTAGTACCTCATGACTACG
TTCAAGTAGGAGAAAAAACTTTTGGAGAGTTGGCGCAGGCAGAGCTTGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCCAAGGCAGCTTTTGCGAAAGCTAAAGCAGAATTGCAGGC
CAAGGGTGTCACCTTCCCAATTCGTTTGGATGTTCCAGTTGAACAAACGGATGTCATTGCCGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAGTCAACACTTGGTACAGAGAATGTCATTGTCGATGTCCTTCAAATGACAGATAATGAAAAAATG
AGCATTACGTCTCAAGCTAAGGTTCCAGCACAAAAAGACTACGACTTGAATGGAACTGGTTGGGGACCCGACTATCAAGA
CCCAGCTACCTACCTAAATATTCTTGATGCTAAGAAGGGTTCTGCTCTTAAACACTTGGGAATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTCAAT
AAGCGTTACGAAAAATACGCTAAAGCTCAAGCTTGGGTGTCTGATAGCTCGCTCTTGATTCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAATTGCAAAATGACGTCGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.167

100

0.554
  amiA3 Streptococcus thermophilus LMD-9

54.325

100

0.547
  amiA3 Streptococcus thermophilus LMG 18311

53.869

100

0.542

Multiple sequence alignment