Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GOM47_RS08110 Genome accession   NZ_CP046524
Coordinates   1611573..1613534 (-) Length   653 a.a.
NCBI ID   WP_235080481.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606573..1618534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08090 (GOM47_08085) - 1607809..1608492 (-) 684 WP_235080477.1 tyrosine-protein kinase -
  GOM47_RS08095 (GOM47_08090) cpsC 1608502..1609194 (-) 693 WP_235080478.1 capsular polysaccharide biosynthesis protein CpsC -
  GOM47_RS08100 (GOM47_08095) cps4B 1609203..1609934 (-) 732 WP_235080479.1 capsular polysaccharide biosynthesis protein Cps4B -
  GOM47_RS08105 (GOM47_08100) - 1609936..1611381 (-) 1446 WP_235080480.1 LCP family protein -
  GOM47_RS08110 (GOM47_08105) amiA3 1611573..1613534 (-) 1962 WP_235080481.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS08115 (GOM47_08110) amiA 1613690..1615657 (-) 1968 WP_235080482.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS08120 (GOM47_08115) - 1615826..1617436 (-) 1611 WP_235080483.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73163.50 Da        Isoelectric Point: 4.8329

>NTDB_id=405007 GOM47_RS08110 WP_235080481.1 1611573..1613534(-) (amiA3) [Streptococcus oralis strain SOT]
MMKMKKRLIGTGLVLATGILLSACGQFNTNTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQDVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEAESKKA
IEKSQKEFENHIK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=405007 GOM47_RS08110 WP_235080481.1 1611573..1613534(-) (amiA3) [Streptococcus oralis strain SOT]
ATGATGAAAATGAAAAAAAGACTAATCGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTTTCGGCATGTGGACAGTT
CAACACAAATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTCAACTATCTTCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTCGTAGATGGTCTGCTAGAAAATGATAGCTATGGGAACCTCGTGCCAGCTCTAGCG
GAAGACTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACGGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAGTATGCTGCGGACAACAAGGGGCAAGCTATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACTAATGACTTTTCAACTGTTGGGGTCAAA
GCCTTGGATGACTACACAGTCGAGTACACTTTGACTCGACCAGAACCGTATTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTTTTGAAATCAAAGGATAAAGACTTTGGTACCTTGACACCAGACAGTATCCTTTATAATG
GCCCGTATCTGTTAAAAGATTTCACATCAAAATCTTCAATCGAGTATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACTATTGAAAAAGTTAAGTTAGCCTACTTTGATGGGTCAGATCAGGAGATGACGATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCCAAGACAAAAGAAAAATACCAAGACAATATTGTCTATA
GCTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAACAACGGAC
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTGGTTCCCCCAACATTTGTTCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GACGCTCAAGATGCTTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCTCAAGA
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACAAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCGCCAAATCCAGCAGCTCGTGACTACGATCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGATCCCTTCAATGCTGAAACCGGCTTCTATCTCAAGATTTTTGGCCTTGATGCCAAGGAAGACCAAGAGC
TCATCAAGAGTTTGGGGCTCGATACCTATACACAACTCCTGAAAGAAGCAGATGCCGAGAACAAAGATGTCGCTAAGCGT
TATGAAAAATACGCTGAAGCCCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTGGGTATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGACTGCAAAAAGACCCTGTTACCAAGAAACAATTTGACGAAGCCAAGGCTAAGTGGGAAGCAGAAAGTAAAAAGGCT
ATTGAAAAGAGCCAAAAAGAGTTTGAAAATCATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.142

100

0.515
  amiA3 Streptococcus thermophilus LMG 18311

50.989

100

0.513
  amiA Streptococcus salivarius strain HSISS4

50.457

100

0.507

Multiple sequence alignment