Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   GOM47_RS02375 Genome accession   NZ_CP046524
Coordinates   448467..449126 (-) Length   219 a.a.
NCBI ID   WP_235080944.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443467..454126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS02355 (GOM47_02350) - 444346..445038 (+) 693 WP_235080940.1 sugar transferase -
  GOM47_RS02360 (GOM47_02355) - 445081..446310 (+) 1230 WP_235080941.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  GOM47_RS02365 (GOM47_02360) trpB 446643..447824 (+) 1182 WP_235080942.1 tryptophan synthase subunit beta -
  GOM47_RS02370 (GOM47_02365) - 447852..448415 (+) 564 WP_235080943.1 aminodeoxychorismate/anthranilate synthase component II -
  GOM47_RS02375 (GOM47_02370) cclA/cilC 448467..449126 (-) 660 WP_235080944.1 prepilin peptidase Machinery gene
  GOM47_RS02380 (GOM47_02375) - 449196..449651 (+) 456 WP_235080945.1 GNAT family N-acetyltransferase -
  GOM47_RS02385 (GOM47_02380) - 449731..450990 (+) 1260 WP_235080946.1 S41 family peptidase -
  GOM47_RS02390 (GOM47_02385) - 451510..452655 (-) 1146 WP_235080947.1 low temperature requirement protein A -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25078.32 Da        Isoelectric Point: 8.1603

>NTDB_id=404981 GOM47_RS02375 WP_235080944.1 448467..449126(-) (cclA/cilC) [Streptococcus oralis strain SOT]
MIDIYFFLVGSILASFLGLVIDRFPEQSIIFPSSHCDFCQTRLRPLDLIPIISQVIGRFRCRYCKARFPIWYALFELGLG
LLFLAWSWGWISLGQVILITAGLTLGIYDFRHQEYPLLVWLTFHLILMVFCGWNLVMFFFLTLGIISHFIDIRMGAGDFL
FLASCALVFSTTELLILIQFASATGILAFLSQKKKERLPFVPFLLLATCLIIFGKLVIL

Nucleotide


Download         Length: 660 bp        

>NTDB_id=404981 GOM47_RS02375 WP_235080944.1 448467..449126(-) (cclA/cilC) [Streptococcus oralis strain SOT]
ATGATTGATATTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCTTTCTTGGGTTTGGTCATTGACCGTTTTCCAGAGCA
GTCTATTATCTTTCCTTCTAGTCACTGCGATTTCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTATCTCTC
AAGTAATTGGTCGCTTTCGCTGTCGCTACTGCAAGGCCCGTTTTCCTATCTGGTATGCCCTCTTTGAATTGGGCTTGGGG
TTACTTTTTCTGGCTTGGTCATGGGGCTGGATTTCCTTGGGTCAAGTCATCCTAATCACTGCTGGCTTAACCTTGGGCAT
CTATGACTTTCGCCATCAGGAATATCCCTTACTGGTCTGGCTGACGTTCCACCTAATCCTCATGGTTTTCTGTGGTTGGA
ATCTGGTTATGTTCTTCTTCCTTACCCTCGGAATCATATCCCATTTTATCGATATCCGCATGGGAGCAGGAGATTTTCTC
TTTCTAGCTTCTTGTGCCCTCGTCTTTAGCACGACAGAACTACTCATCTTAATCCAGTTTGCTTCTGCGACGGGGATTTT
AGCCTTTCTTTCGCAAAAGAAAAAGGAAAGACTTCCTTTTGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTAGTAATTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

86.758

100

0.868
  cclA/cilC Streptococcus mitis NCTC 12261

84.932

100

0.849
  cclA/cilC Streptococcus pneumoniae TIGR4

84.475

100

0.845
  cclA/cilC Streptococcus pneumoniae Rx1

84.018

100

0.84
  cclA/cilC Streptococcus pneumoniae D39

84.018

100

0.84
  cclA/cilC Streptococcus pneumoniae R6

84.018

100

0.84

Multiple sequence alignment