Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GOM48_RS01475 Genome accession   NZ_CP046523
Coordinates   293522..295504 (+) Length   660 a.a.
NCBI ID   WP_235097910.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 288522..300504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01455 (GOM48_01445) - 288803..289744 (+) 942 WP_084947214.1 beta-1,6-N-acetylglucosaminyltransferase -
  GOM48_RS01460 (GOM48_01450) - 289746..291161 (+) 1416 WP_084947341.1 flippase -
  GOM48_RS01465 (GOM48_01455) - 291163..292161 (+) 999 WP_235097906.1 acyltransferase -
  GOM48_RS01470 (GOM48_01460) glf 292175..293275 (+) 1101 WP_235097908.1 UDP-galactopyranose mutase -
  GOM48_RS01475 (GOM48_01465) amiA3 293522..295504 (+) 1983 WP_235097910.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73113.62 Da        Isoelectric Point: 4.6972

>NTDB_id=404904 GOM48_RS01475 WP_235097910.1 293522..295504(+) (amiA3) [Streptococcus oralis strain SOD]
MKSSKLFALAGVTLLAATTLAACSGSGSSAKGEKTFSYIYETDPDNLNYLTTGKAATADITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAPVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEIKDFSQVG
IKALDDQTIQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHIDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYPETEKAFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKTSTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWKDV
NLADAQDGLYNADKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSLEATLGSENVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEEVS
DVSKRYEKYAAAQAWLTDSALIIPTTSKTGRPMLSKMVPFTLPFAYSGNKGTSEALLYKYLDVQDKAVTADEYQKAQDKW
MKEKEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=404904 GOM48_RS01475 WP_235097910.1 293522..295504(+) (amiA3) [Streptococcus oralis strain SOD]
ATGAAAAGTTCAAAACTATTTGCTCTTGCAGGTGTAACCTTATTGGCGGCTACTACTTTAGCTGCATGCTCTGGATCAGG
TTCGAGCGCTAAAGGAGAGAAGACATTCTCATATATCTATGAAACAGACCCTGACAACCTCAACTATTTGACAACTGGTA
AGGCAGCAACTGCTGACATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGACCGCTATGGTAACTTTGTGCCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGACGGCTTGACTTACACTTATACAATCCGTAAAGATGCCAAGTGGTACACATC
TGAAGGAGAAGAGTATGCGCCTGTCAAAGCTCAAGACTTTGTAACAGGTCTTAAATATGCTGCTGATAAAAAATCAGATG
GTCTTTATCTTGTTCAGGAATCAATCAAAGGGTTGGATGCTTATGTGAAAGGGGAAATTAAAGATTTCTCACAAGTTGGT
ATTAAGGCTCTTGATGATCAAACAATTCAGTACACTTTGAACAAGCCAGAAAGCTTCTGGAATTCTAAGACAACGATGGG
AGTTTTGGCTCCAGTAAATGAAGAGTTCTTAAACTCTAAAGGGGATGATTTCGCTAAAGGAACAGATCCAAGTAGCATCC
TATACAATGGACCATTCTTGCTCAAATCTATCGTAGCTAAATCTTCTGTTGAGTTTGAAAAAAATCCAAACTACTGGGAT
AAGGACAATGTCCATATCGATAAGGTTAAATTATCATTCTGGGATGGTCAAGATACCAACAAACCGACTGAAGCCTTCAA
GGATGGAAGTTTCACTATGGCCCGTCTCTTCCCAACAAGCGCTAGCTACCCAGAGACTGAAAAAGCATTTAAAGACAATA
TTGTTTACACACAACAAGATTCTACTACTTATTTAGTAGGTACTAATATTGATCGCCAGTCTTATAAGTATACTTCTAAG
ACAACGGATGAAGAAAAAACATCAACCAAGAAAGCTCTTCTAAACAAAGATTTCCGTCAAGCTCTTGCCTTTGGTTTTGA
TAGAACCGCCTATGCCTCTCAAGTAAACGGTGCAAGTGGTGCAACTAAACTGCTTCGTAACTTGTTTGTCCCACCTACAT
TTGTTCAAGCAGATGGCAAAAACTTTGGTGAGTTGGTCAAAGAAAAATTGGTGACTTATGGAGACGAGTGGAAGGATGTG
AACTTAGCTGATGCTCAGGATGGACTCTATAACGCAGATAAGGCTAAAGCAGAATTTGCCAAAGCTAAGACAGCTCTTCA
AGCAGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCAGTAGACCAAACAAACACGACGAAAGTCCAACGTGTTCAAT
CCTTCAAACAATCGCTTGAAGCTACTCTAGGGTCAGAGAACGTCGTTGTCGATATCCAACAACTTCAAAAAGATGATGTC
TTGAATATCACTTACTTTGCTGAAACTGCAGCTGGAGAAGACTGGGATATCTCAGATAATGTGGGATGGTCTCCAGACTT
TGCAGACCCATCTACTTACCTTGATATCATCAAGCCATCTGTCGGAGAAAATACAAAGACTTACCTAGGATTTGACTCTG
GAACAAACAACGCTGCAGCTAAGCAAGTTGGTTTGGAAGACTACGAAAAAATGGTTGTAGAAGCCGGGGAAGAAGTGAGT
GACGTTTCAAAACGTTATGAGAAATATGCTGCAGCCCAAGCTTGGTTGACCGACAGTGCCTTGATCATCCCAACAACTTC
TAAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACGCTTCCGTTTGCATACTCTGGTAACAAGGGTACAAGCG
AAGCTCTCTTGTATAAATACCTAGACGTACAAGATAAAGCAGTGACAGCAGATGAATACCAAAAAGCTCAAGATAAATGG
ATGAAAGAAAAAGAAGAGTCGAATAAAAAGGCCCAAGAAGATCTTGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.909

100

0.6
  amiA3 Streptococcus thermophilus LMG 18311

59.304

100

0.594
  amiA Streptococcus salivarius strain HSISS4

58.548

100

0.586

Multiple sequence alignment