Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GOM48_RS01395 Genome accession   NZ_CP046523
Coordinates   276097..278058 (+) Length   653 a.a.
NCBI ID   WP_235097893.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 271097..283058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01385 (GOM48_01375) - 272207..273817 (+) 1611 WP_235097890.1 glycoside hydrolase family 13 protein -
  GOM48_RS01390 (GOM48_01380) amiA 273986..275953 (+) 1968 WP_132972353.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS01395 (GOM48_01385) amiA3 276097..278058 (+) 1962 WP_235097893.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS01400 (GOM48_01390) - 278247..279692 (+) 1446 WP_235097895.1 LCP family protein -
  GOM48_RS01405 (GOM48_01395) cps4B 279694..280425 (+) 732 WP_235097897.1 capsular polysaccharide biosynthesis protein Cps4B -
  GOM48_RS01410 (GOM48_01400) cpsC 280434..281126 (+) 693 WP_235098707.1 capsular polysaccharide biosynthesis protein CpsC -
  GOM48_RS01415 (GOM48_01405) - 281136..281819 (+) 684 WP_235097899.1 tyrosine-protein kinase -
  GOM48_RS01420 (GOM48_01410) - 281917..282510 (+) 594 WP_394335545.1 sugar transferase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72975.28 Da        Isoelectric Point: 4.9638

>NTDB_id=404903 GOM48_RS01395 WP_235097893.1 276097..278058(+) (amiA3) [Streptococcus oralis strain SOD]
MMKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLTPALA
EDWSVSADGLTYTYKLRKDSKWYTADGEEYASVKAQDFVAGIKYAADNKGQAMDLIQNSIKGLNDYVTGATNDFTTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTSD
QQKNSTQTAILNKNFRQAINFGINRTAYSAQSNGEEAASKTLRNTLVPLTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGIDAKDDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEAESKKA
IEKSQKEFKNHIK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=404903 GOM48_RS01395 WP_235097893.1 276097..278058(+) (amiA3) [Streptococcus oralis strain SOD]
ATGATGAAAATGAAAAAAAGACTTATCGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCGGCATGTGGACAGTC
CAACACAGATACAAGCACTTATTCATCCACATTTAGTGCGAATCCGACAACTTTTAACTATCTTCTAGATTATTATGCGG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGCTGGAAAATGATAGCTATGGCAATCTAACGCCAGCTCTAGCT
GAAGATTGGTCTGTTTCAGCAGATGGTTTGACCTATACCTACAAACTCAGAAAAGATTCCAAGTGGTATACGGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCGCTGGGATCAAATATGCTGCGGACAACAAGGGGCAAGCCATGG
ATCTCATTCAAAATTCTATCAAGGGATTGAATGACTATGTGACAGGTGCGACCAATGACTTCACAACAGTTGGTGTCAAA
GCCTTGGATGACTACACAGTCGAGTATACTTTGACACGGCCAGAACCTTATTGGAACTCAAAAACAACCAATAGTATCCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAATG
GACCATATCTGTTAAAAGATTTTACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAACTGGCTTATTTTGATGGCTCTGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACGAAAGAAAAATACCAAGACAATATCGTTTATA
GCTTGCAGGACAAGACTTCTTGGTACTTCAACTTTAACGTTAACCGTAAAGCCTATAACCATACTGCAAAAACATCAGAT
CAACAAAAGAACTCAACGCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTAATCGAACAGC
CTACTCTGCCCAATCTAACGGTGAAGAAGCGGCAAGTAAGACCCTTCGAAATACCCTTGTTCCCCTAACATTTGTCCAGG
TGGGAGATAAGACTTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCCAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTCTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCGACAGATGACTTTGGAAATGTC
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGATTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATTTAGATCCCTTCAACGCTGAAACTGGCTTCTATCTCAAGATTTTTGGTATTGACGCCAAGGATGACCAAGAGC
TCATCAAGAGTCTAGGGTTAGATACCTATACACAACTCCTGAAAGAAGCAGATGCTGAGAACAAAGATGTCGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATCGACAATTCTCTGGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCTCTAGTGGGAATCAAGGGTGACGGAAATAATTACAAGTACA
TGAGATTACAAAAAGATCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGCAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTAAAAATCATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.912

100

0.513
  amiA3 Streptococcus thermophilus LMG 18311

50.76

100

0.511
  amiA Streptococcus salivarius strain HSISS4

50.228

100

0.505

Multiple sequence alignment