Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM48_RS01390 Genome accession   NZ_CP046523
Coordinates   273986..275953 (+) Length   655 a.a.
NCBI ID   WP_132972353.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 268986..280953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01375 (GOM48_01365) - 269407..270438 (+) 1032 WP_084947254.1 sensor histidine kinase -
  GOM48_RS01380 (GOM48_01370) - 270570..272054 (-) 1485 WP_235097888.1 DUF1846 domain-containing protein -
  GOM48_RS01385 (GOM48_01375) - 272207..273817 (+) 1611 WP_235097890.1 glycoside hydrolase family 13 protein -
  GOM48_RS01390 (GOM48_01380) amiA 273986..275953 (+) 1968 WP_132972353.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS01395 (GOM48_01385) amiA3 276097..278058 (+) 1962 WP_235097893.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS01400 (GOM48_01390) - 278247..279692 (+) 1446 WP_235097895.1 LCP family protein -
  GOM48_RS01405 (GOM48_01395) cps4B 279694..280425 (+) 732 WP_235097897.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72410.11 Da        Isoelectric Point: 5.2134

>NTDB_id=404902 GOM48_RS01390 WP_132972353.1 273986..275953(+) (amiA) [Streptococcus oralis strain SOD]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAIDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAQDFVTGLKHAADGKSDGLSLLQDSIKGLAAYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSSILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEVQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKAELQAKGVTFPIRLDIPVEQTDVIAVQQTNSLKQSIESTLGTENVIVDVLQMTDNEKM
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFSKAYSQVGIKGDPFVFKGLELQKDVVTTKEYEEALKKWQKEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=404902 GOM48_RS01390 WP_132972353.1 273986..275953(+) (amiA) [Streptococcus oralis strain SOD]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTCTTGAGTGCAGCCCTTCTGTTAACTGCTTGTGGGCAAAGCGA
AAAGAAGGCTGATGCTCCCAAGACATTTTCTTATGTCTATGCAATAGATCCATCATCTTTGGACTACAGCGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCCAACGTTGTCGATGGCCTCTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGCTTGACCTATACCTACAAACTTCGTAAGGGCGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTCAAGGCTCAAGACTTTGTTACAGGTCTGAAACACGCAGCTGACGGTAAATCAGACG
GCCTCTCTCTCCTTCAAGATTCTATCAAAGGCTTGGCTGCCTACATCAGTGGTGAAAGCAATGACTTTTCTACTGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAAGTTACAACTGC
AACCATGCTTCCAGTTAATGAAGAGTTTTTGAATTCTAAAGGGAGCGACTACGGTGCGCCAACACCATCAAGTATTCTTT
ATAACGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATCGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTTAAGATTGACAACATCAAACTAACTTTCTATGATGGTTCCGACCAAGAATCTTTGATTCGCAGCTTTACACA
AGGTGCTTATACAACAGCTCGTCTCTTCCCAACAAGCTCAAACTTTGAATCAACTAAAAAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACAAGCTACTATCTCACTGTTAACGTAAACCGTCAATCTTACAATAAAACAGCCAAAACA
GACGAAGTTCAAAAAACATCAACCAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCACTGAACTTTGCCCTTGACCG
TCACTCTTACACTGCTCAGTTGAATGGTGAAGAAGGGGCGGACAAGATTATCCGTAATAGCCTAGTACCTCATGACTACG
TTCAAGTAGGTGAAAAGACCTTTGGAGAGTTGGCTCAGGCAGAGCTCGTTTCTTATGGTGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTATAGTCCTGAAAAAGCTAAGGCAGCCTTTGCAAAGGCTAAGGCAGAATTGCAGGC
CAAGGGTGTGACCTTCCCAATCCGTTTGGACATCCCCGTTGAACAAACAGATGTAATCGCGGTTCAACAGACTAACTCAC
TCAAGCAGTCTATCGAGTCAACACTTGGTACAGAGAATGTCATCGTCGATGTCCTTCAAATGACAGATAATGAAAAAATG
AGTATTACGTCTCAAGCTAAGGTTCCAGCACAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAGGA
CCCAGCTACCTACCTAAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGTATCACCCGTGGAAAAGACC
CAGAAGTGATGGCTCAAGTCGGTCTAGACGAATACAAGAAACTCTTGGATGATGCCGCAGCTGAAACCAGTGACCTCAAT
AAGCGTTATGAGAAATACGCTAAAGCTCAAGCTTGGGTATCAGATAGCTCACTCTTAATCCCAGTAGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCGTTCTCAAAAGCATACTCACAAGTCGGAATCAAGGGAGATCCATTTGTCTTCA
AAGGTTTGGAGCTGCAAAAGGATGTCGTAACTACAAAAGAATACGAAGAAGCTCTCAAGAAATGGCAGAAAGAAAAGATT
GAAACAAATGCCAAATACCAAAAAGAGCTAGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.167

100

0.554
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54

Multiple sequence alignment