Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GN242_RS19460 Genome accession   NZ_CP046509
Coordinates   4290486..4291043 (-) Length   185 a.a.
NCBI ID   WP_156288062.1    Uniprot ID   A0A6I6EVW5
Organism   Erwinia sorbitola strain J780     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4285486..4296043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN242_RS19455 (GN242_19455) - 4288166..4289839 (-) 1674 WP_231617120.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  GN242_RS19460 (GN242_19460) ssb 4290486..4291043 (-) 558 WP_156288062.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GN242_RS19465 (GN242_19465) uvrA 4291295..4294123 (+) 2829 WP_156288063.1 excinuclease ABC subunit UvrA -
  GN242_RS19470 (GN242_19470) - 4294435..4295487 (+) 1053 WP_154754236.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19884.91 Da        Isoelectric Point: 5.2456

>NTDB_id=404797 GN242_RS19460 WP_156288062.1 4290486..4291043(-) (ssb) [Erwinia sorbitola strain J780]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRAQGAGAPAGGGQGGNNNGWGQPQQPQQQPQGSNQFSGGAQQSRP
QQQPQQNNAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=404797 GN242_RS19460 WP_156288062.1 4290486..4291043(-) (ssb) [Erwinia sorbitola strain J780]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTTTAGTCGGAAATCTGGGGCAAGACCCGGAAGTTCGCTACATGCCGAATGG
CGGTGCCGTTGCCAACATGACTCTGGCCACCTCCGAAAGCTGGCGTGACAAGCAGACCGGTGAAACCAAAGAGAAAACCG
AGTGGCACCGTGTTGTGCTGTTCGGCAAACTGGCCGAAGTGGCCGGTGAATACCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGCAAATGGACTGATCAGGCGGGTGTCGAAAAGTACACCACCGAAGTTGTGGTCAATGTCGG
CGGTACCATGCAGATGCTGGGCGGTCGTGCTCAGGGTGCAGGCGCACCAGCAGGCGGCGGTCAGGGTGGCAACAACAACG
GTTGGGGCCAGCCACAGCAGCCTCAGCAGCAGCCACAGGGCAGCAACCAGTTCAGCGGCGGCGCGCAGCAGTCTCGCCCG
CAGCAGCAGCCACAGCAGAACAACGCACCGGCGAACAATGAGCCACCAATGGACTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6EVW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.474

100

0.714
  ssb Glaesserella parasuis strain SC1401

53.927

100

0.557
  ssb Neisseria meningitidis MC58

44.751

97.838

0.438
  ssb Neisseria gonorrhoeae MS11

44.751

97.838

0.438

Multiple sequence alignment