Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VY92_RS10735 Genome accession   NZ_CP058307
Coordinates   2201749..2202261 (-) Length   170 a.a.
NCBI ID   WP_035689391.1    Uniprot ID   A0ABU7QRI7
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2196749..2207261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS10715 (VY92_010720) - 2197653..2198600 (+) 948 WP_012564931.1 IS30-like element ISAeca1 family transposase -
  VY92_RS10720 (VY92_010725) - 2198758..2199399 (+) 642 WP_011751353.1 type A-2 chloramphenicol O-acetyltransferase CatII -
  VY92_RS10725 (VY92_010730) - 2200073..2201005 (+) 933 WP_004235553.1 IS5-like element ISKpn13 family transposase -
  VY92_RS10730 (VY92_010735) - 2201191..2201673 (-) 483 WP_035689389.1 hypothetical protein -
  VY92_RS10735 (VY92_010740) ssb 2201749..2202261 (-) 513 WP_035689391.1 single-stranded DNA-binding protein Machinery gene
  VY92_RS10740 (VY92_010745) - 2202462..2202803 (-) 342 WP_035689393.1 hypothetical protein -
  VY92_RS10745 (VY92_010750) - 2202982..2203494 (-) 513 WP_035689394.1 DUF3158 family protein -
  VY92_RS10750 (VY92_010755) - 2203535..2204287 (-) 753 WP_035689396.1 PFL_4669 family integrating conjugative element protein -
  VY92_RS10755 (VY92_010760) - 2204899..2206125 (-) 1227 WP_046097475.1 STY4528 family pathogenicity island replication protein -
  VY92_RS10760 (VY92_010765) - 2206288..2206839 (-) 552 WP_035688466.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19284.30 Da        Isoelectric Point: 4.8418

>NTDB_id=404709 VY92_RS10735 WP_035689391.1 2201749..2202261(-) (ssb) [Avibacterium paragallinarum strain AVPG2015]
MAGINKVIIVGNLGADPEVRTMPNGEAVSNISVATSESWIDKNTSEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAEQATQVGAAQQGRNQYVQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDDQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=404709 VY92_RS10735 WP_035689391.1 2201749..2202261(-) (ssb) [Avibacterium paragallinarum strain AVPG2015]
ATGGCAGGGATTAATAAAGTGATTATCGTGGGTAACCTTGGTGCAGATCCTGAAGTAAGAACAATGCCGAATGGCGAAGC
GGTTTCCAATATAAGTGTGGCAACTAGTGAAAGTTGGATAGATAAGAATACAAGTGAAAAACGTGAATTAACCGAGTGGC
ATCGGATTGTGTTTTATCGTCGTCAAGCTGAGATTGTGGGAGAATATTTACGCAAAGGCTCGAAAGTTTATGTCGAGGGG
CGATTAAGAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGTTATACCACTGAAATTCAAGGCGATGTACTTCAAAT
GCTAGATAGCCGTCCTGAGCGCTATCAAGCAGAGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
TGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCCCCTATCCCTGAT
GATGGCTTTGACGATGATCAGATTCCTTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

60.656

100

0.653
  ssb Vibrio cholerae strain A1552

53.631

100

0.565
  ssb Neisseria meningitidis MC58

47.126

100

0.482
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.476

Multiple sequence alignment