Detailed information NTG0404638

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: DXO206_RS17435
• Genome accession: NZ_CP046481
• Coordinates: 3731140..3732198 (-)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain DXO-206
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3726140..3737198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXO206_RS17410 (DXO206_017450)	-	3726352..3727150 (+)	799	WP_094187763.1	IS5 family transposase	-
DXO206_RS17415 (DXO206_017455)	-	3727221..3729170 (-)	1950	WP_011407796.1	type IV pilus secretin PilQ	-
DXO206_RS17420 (DXO206_017460)	-	3729190..3729723 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
DXO206_RS17425 (DXO206_017465)	-	3729720..3730385 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
DXO206_RS17430 (DXO206_017470)	-	3730382..3731140 (-)	759	WP_011257994.1	PilN domain-containing protein	-
DXO206_RS17435 (DXO206_017475)	comM	3731140..3732198 (-)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
DXO206_RS17440 (DXO206_017480)	-	3732414..3734843 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
DXO206_RS17445 (DXO206_017485)	-	3735153..3735803 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=404638 DXO206_RS17435 WP_011407795.1 3731140..3732198(-) (comM) [Xanthomonas oryzae pv. oryzae strain DXO-206]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=404638 DXO206_RS17435 WP_011407795.1 3731140..3732198(-) (comM) [Xanthomonas oryzae pv. oryzae strain DXO-206]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477