Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GFX43_RS01025 Genome accession   NZ_CP046448
Coordinates   176847..177365 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ZD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 171847..182365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS01005 (GFX43_001005) yyzM 172921..173127 (+) 207 WP_003226838.1 DUF951 family protein -
  GFX43_RS01010 (GFX43_001010) yyaE 173178..175181 (+) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  GFX43_RS01015 (GFX43_001015) ychF 175308..176408 (+) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  GFX43_RS01020 (GFX43_001020) rpsF 176519..176806 (+) 288 WP_003236622.1 30S ribosomal protein S6 -
  GFX43_RS01025 (GFX43_001025) ssbA 176847..177365 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GFX43_RS01030 (GFX43_001030) rpsR 177409..177648 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  GFX43_RS01035 (GFX43_001035) xth 177713..178471 (+) 759 WP_015385216.1 exodeoxyribonuclease III -
  GFX43_RS01040 (GFX43_001040) ccpB 178530..179462 (+) 933 WP_015385215.1 transcriptional regulator CcpB -
  GFX43_RS01045 (GFX43_001045) yyaH 179518..179898 (+) 381 WP_015483980.1 VOC family protein -
  GFX43_RS01050 (GFX43_001050) maa 179914..180468 (+) 555 WP_015385213.1 maltose acetyltransferase domain-containing protein -
  GFX43_RS01055 (GFX43_001055) yyaJ 180502..181857 (-) 1356 WP_015483979.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=404364 GFX43_RS01025 WP_003219228.1 176847..177365(+) (ssbA) [Bacillus subtilis strain ZD01]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=404364 GFX43_RS01025 WP_003219228.1 176847..177365(+) (ssbA) [Bacillus subtilis strain ZD01]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment