Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GNG27_RS01240 Genome accession   NZ_CP046445
Coordinates   266968..267498 (+) Length   176 a.a.
NCBI ID   WP_032615999.1    Uniprot ID   A0A3E1ZQY9
Organism   Leclercia sp. 119287     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 261968..272498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG27_RS01220 (GNG27_01220) aphA 262296..263009 (+) 714 WP_156262692.1 acid phosphatase AphA -
  GNG27_RS01225 (GNG27_01225) - 263120..263536 (+) 417 WP_142487855.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GNG27_RS01230 (GNG27_01230) - 263539..263892 (+) 354 WP_142490045.1 MmcQ/YjbR family DNA-binding protein -
  GNG27_RS01235 (GNG27_01235) uvrA 263896..266718 (-) 2823 WP_142487856.1 excinuclease ABC subunit UvrA -
  GNG27_RS01240 (GNG27_01240) ssb 266968..267498 (+) 531 WP_032615999.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GNG27_RS01245 (GNG27_01245) - 267563..267844 (-) 282 WP_156262693.1 YjcB family protein -
  GNG27_RS01250 (GNG27_01250) - 268456..269784 (+) 1329 WP_231600419.1 sensor domain-containing diguanylate cyclase -
  GNG27_RS01255 (GNG27_01255) - 270123..271709 (+) 1587 WP_142487858.1 EAL domain-containing protein -
  GNG27_RS01260 (GNG27_01260) soxS 271706..272032 (-) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18849.87 Da        Isoelectric Point: 5.2456

>NTDB_id=404315 GNG27_RS01240 WP_032615999.1 266968..267498(+) (ssb) [Leclercia sp. 119287]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=404315 GNG27_RS01240 WP_032615999.1 266968..267498(+) (ssb) [Leclercia sp. 119287]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACCGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAGCCGTCTGCACCG
GCACAGTCCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1ZQY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.602
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472

Multiple sequence alignment