Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GN308_RS17060 Genome accession   NZ_CP046427
Coordinates   3934208..3934672 (-) Length   154 a.a.
NCBI ID   WP_038607450.1    Uniprot ID   A0AAX2R831
Organism   Phocaeicola dorei strain JR04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3929208..3939672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN308_RS17040 (GN308_17230) - 3929217..3929906 (+) 690 WP_007832119.1 response regulator transcription factor -
  GN308_RS17045 (GN308_17235) - 3929925..3931706 (+) 1782 WP_007846292.1 sensor histidine kinase -
  GN308_RS17050 (GN308_17245) - 3932178..3932804 (-) 627 WP_038607446.1 4'-phosphopantetheinyl transferase family protein -
  GN308_RS17055 (GN308_17250) gldE 3932813..3934171 (-) 1359 WP_007840062.1 gliding motility-associated protein GldE -
  GN308_RS17060 (GN308_17255) ssb 3934208..3934672 (-) 465 WP_038607450.1 single-stranded DNA-binding protein Machinery gene
  GN308_RS17065 (GN308_17260) mutY 3934687..3935745 (-) 1059 WP_038607451.1 A/G-specific adenine glycosylase -
  GN308_RS17070 (GN308_17265) - 3935925..3936200 (+) 276 WP_005839749.1 HU family DNA-binding protein -
  GN308_RS17075 (GN308_17270) - 3936439..3938013 (+) 1575 WP_007840057.1 ribonuclease E/G -
  GN308_RS17080 (GN308_17275) - 3938185..3938991 (-) 807 WP_007832110.1 N-acetylmuramoyl-L-alanine amidase -
  GN308_RS17085 (GN308_17280) - 3938998..3939540 (-) 543 WP_007832102.1 TlpA family protein disulfide reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17267.39 Da        Isoelectric Point: 7.0120

>NTDB_id=404241 GN308_RS17060 WP_038607450.1 3934208..3934672(-) (ssb) [Phocaeicola dorei strain JR04]
MSVNKVILIGNVGKDPDVRYLDTGIAVATFSLATTDRAYTLQNGTQVPERTEWHNIVLWRGLAQTAEKYVRKGDKLYIEG
KIRSRSYDDQNGIKRTIVEIFADNMEMLTPRNASQQLGTGYVQAQAVSRQQMSAQVAPQQQQTSDNSLTDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=404241 GN308_RS17060 WP_038607450.1 3934208..3934672(-) (ssb) [Phocaeicola dorei strain JR04]
ATGTCAGTAAATAAAGTCATTTTGATTGGAAATGTAGGAAAGGACCCTGATGTGAGATATTTGGATACCGGCATTGCCGT
TGCCACTTTCTCGTTGGCTACCACCGATCGTGCCTATACGTTGCAGAATGGAACACAGGTTCCCGAACGTACGGAATGGC
ATAATATCGTGTTATGGAGAGGGCTGGCTCAAACTGCGGAAAAATATGTCCGTAAGGGCGACAAACTCTATATAGAAGGA
AAAATCCGTAGCCGTTCATACGATGATCAGAATGGTATAAAACGCACCATTGTCGAGATTTTTGCTGATAATATGGAGAT
GTTGACCCCGCGTAACGCCTCACAGCAACTGGGTACGGGATATGTGCAGGCACAAGCGGTATCCCGGCAGCAGATGTCTG
CACAAGTAGCTCCGCAACAACAGCAAACTTCGGATAATAGCCTGACAGACGATTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

42.045

100

0.481
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.474
  ssb Glaesserella parasuis strain SC1401

37.222

100

0.435
  ssb Vibrio cholerae strain A1552

37.931

100

0.429

Multiple sequence alignment