Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GN306_RS15940 | Genome accession | NZ_CP046425 |
| Coordinates | 3724707..3725171 (-) | Length | 154 a.a. |
| NCBI ID | WP_007832113.1 | Uniprot ID | A0A076ITT6 |
| Organism | Phocaeicola dorei strain JR02 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3719707..3730171
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN306_RS15920 (GN306_16075) | - | 3719716..3720405 (+) | 690 | WP_007832119.1 | response regulator transcription factor | - |
| GN306_RS15925 (GN306_16080) | - | 3720424..3722205 (+) | 1782 | WP_007846292.1 | sensor histidine kinase | - |
| GN306_RS15930 (GN306_16090) | - | 3722677..3723303 (-) | 627 | WP_007840064.1 | 4'-phosphopantetheinyl transferase family protein | - |
| GN306_RS15935 (GN306_16095) | gldE | 3723312..3724670 (-) | 1359 | WP_007840062.1 | gliding motility-associated protein GldE | - |
| GN306_RS15940 (GN306_16100) | ssb | 3724707..3725171 (-) | 465 | WP_007832113.1 | single-stranded DNA-binding protein | Machinery gene |
| GN306_RS15945 (GN306_16105) | mutY | 3725186..3726244 (-) | 1059 | WP_007840060.1 | A/G-specific adenine glycosylase | - |
| GN306_RS15950 (GN306_16110) | - | 3726424..3726699 (+) | 276 | WP_005839749.1 | HU family DNA-binding protein | - |
| GN306_RS15955 (GN306_16115) | - | 3726938..3728512 (+) | 1575 | WP_007840057.1 | ribonuclease E/G | - |
| GN306_RS15960 (GN306_16120) | - | 3728684..3729490 (-) | 807 | WP_007832110.1 | N-acetylmuramoyl-L-alanine amidase | - |
| GN306_RS15965 (GN306_16125) | - | 3729497..3730039 (-) | 543 | WP_007832102.1 | TlpA family protein disulfide reductase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17251.35 Da Isoelectric Point: 7.0120
>NTDB_id=404224 GN306_RS15940 WP_007832113.1 3724707..3725171(-) (ssb) [Phocaeicola dorei strain JR02]
MSVNKVILIGNVGKDPDVRYLDTGIAVATFSLATTDRAYTLQNGTQVPERTEWHNIVLWRGLAQTAEKYVRKGDKLYIEG
KIRSRSYDDQNGIKRTIVEIFADNMEMLTPRNASQQPGTGYVQAQAVSRQQMSAQVAPQQQQTSDNSLTDDLPF
MSVNKVILIGNVGKDPDVRYLDTGIAVATFSLATTDRAYTLQNGTQVPERTEWHNIVLWRGLAQTAEKYVRKGDKLYIEG
KIRSRSYDDQNGIKRTIVEIFADNMEMLTPRNASQQPGTGYVQAQAVSRQQMSAQVAPQQQQTSDNSLTDDLPF
Nucleotide
Download Length: 465 bp
>NTDB_id=404224 GN306_RS15940 WP_007832113.1 3724707..3725171(-) (ssb) [Phocaeicola dorei strain JR02]
ATGTCAGTAAATAAAGTCATTTTGATTGGAAATGTAGGAAAGGACCCTGATGTGAGATATTTGGATACCGGCATTGCCGT
TGCCACTTTCTCGTTGGCTACCACCGATCGTGCCTATACGTTGCAGAATGGAACACAGGTTCCCGAACGTACGGAATGGC
ATAATATCGTGTTATGGAGAGGGCTGGCTCAAACTGCGGAAAAATATGTCCGTAAGGGCGACAAACTCTACATAGAAGGA
AAAATCCGTAGCCGTTCATACGATGATCAGAATGGTATAAAACGCACCATTGTCGAGATTTTTGCTGATAATATGGAGAT
GTTGACCCCGCGTAACGCCTCACAGCAACCGGGTACGGGATATGTGCAGGCACAAGCGGTATCCCGGCAGCAGATGTCTG
CACAAGTAGCTCCGCAACAACAGCAAACTTCGGATAATAGCCTGACAGACGATTTACCTTTTTAA
ATGTCAGTAAATAAAGTCATTTTGATTGGAAATGTAGGAAAGGACCCTGATGTGAGATATTTGGATACCGGCATTGCCGT
TGCCACTTTCTCGTTGGCTACCACCGATCGTGCCTATACGTTGCAGAATGGAACACAGGTTCCCGAACGTACGGAATGGC
ATAATATCGTGTTATGGAGAGGGCTGGCTCAAACTGCGGAAAAATATGTCCGTAAGGGCGACAAACTCTACATAGAAGGA
AAAATCCGTAGCCGTTCATACGATGATCAGAATGGTATAAAACGCACCATTGTCGAGATTTTTGCTGATAATATGGAGAT
GTTGACCCCGCGTAACGCCTCACAGCAACCGGGTACGGGATATGTGCAGGCACAAGCGGTATCCCGGCAGCAGATGTCTG
CACAAGTAGCTCCGCAACAACAGCAAACTTCGGATAATAGCCTGACAGACGATTTACCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
42.045 |
100 |
0.481 |
| ssb | Neisseria gonorrhoeae MS11 |
46.853 |
92.857 |
0.435 |
| ssb | Glaesserella parasuis strain SC1401 |
37.222 |
100 |
0.435 |
| ssb | Vibrio cholerae strain A1552 |
37.931 |
100 |
0.429 |