Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GN305_RS16345 | Genome accession | NZ_CP046424 |
| Coordinates | 3842201..3842665 (-) | Length | 154 a.a. |
| NCBI ID | WP_007832113.1 | Uniprot ID | A0A076ITT6 |
| Organism | Phocaeicola dorei strain JR01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3837201..3847665
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN305_RS16325 (GN305_16455) | - | 3837210..3837899 (+) | 690 | WP_007832119.1 | response regulator transcription factor | - |
| GN305_RS16330 (GN305_16460) | - | 3837918..3839699 (+) | 1782 | WP_007846292.1 | sensor histidine kinase | - |
| GN305_RS16335 (GN305_16470) | - | 3840171..3840797 (-) | 627 | WP_007840064.1 | 4'-phosphopantetheinyl transferase family protein | - |
| GN305_RS16340 (GN305_16475) | gldE | 3840806..3842164 (-) | 1359 | WP_007840062.1 | gliding motility-associated protein GldE | - |
| GN305_RS16345 (GN305_16480) | ssb | 3842201..3842665 (-) | 465 | WP_007832113.1 | single-stranded DNA-binding protein | Machinery gene |
| GN305_RS16350 (GN305_16485) | mutY | 3842680..3843738 (-) | 1059 | WP_007840060.1 | A/G-specific adenine glycosylase | - |
| GN305_RS16355 (GN305_16490) | - | 3843918..3844193 (+) | 276 | WP_005839749.1 | HU family DNA-binding protein | - |
| GN305_RS16360 (GN305_16495) | - | 3844432..3846006 (+) | 1575 | WP_007840057.1 | ribonuclease E/G | - |
| GN305_RS16365 (GN305_16500) | - | 3846178..3846984 (-) | 807 | WP_007832110.1 | N-acetylmuramoyl-L-alanine amidase | - |
| GN305_RS16370 (GN305_16505) | - | 3846991..3847533 (-) | 543 | WP_007832102.1 | TlpA family protein disulfide reductase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17251.35 Da Isoelectric Point: 7.0120
>NTDB_id=404215 GN305_RS16345 WP_007832113.1 3842201..3842665(-) (ssb) [Phocaeicola dorei strain JR01]
MSVNKVILIGNVGKDPDVRYLDTGIAVATFSLATTDRAYTLQNGTQVPERTEWHNIVLWRGLAQTAEKYVRKGDKLYIEG
KIRSRSYDDQNGIKRTIVEIFADNMEMLTPRNASQQPGTGYVQAQAVSRQQMSAQVAPQQQQTSDNSLTDDLPF
MSVNKVILIGNVGKDPDVRYLDTGIAVATFSLATTDRAYTLQNGTQVPERTEWHNIVLWRGLAQTAEKYVRKGDKLYIEG
KIRSRSYDDQNGIKRTIVEIFADNMEMLTPRNASQQPGTGYVQAQAVSRQQMSAQVAPQQQQTSDNSLTDDLPF
Nucleotide
Download Length: 465 bp
>NTDB_id=404215 GN305_RS16345 WP_007832113.1 3842201..3842665(-) (ssb) [Phocaeicola dorei strain JR01]
ATGTCAGTAAATAAAGTCATTTTGATTGGAAATGTAGGAAAGGACCCTGATGTGAGATATTTGGATACCGGCATTGCCGT
TGCCACTTTCTCGTTGGCTACCACCGATCGTGCCTATACGTTGCAGAATGGAACACAGGTTCCCGAACGTACGGAATGGC
ATAATATCGTGTTATGGAGAGGGCTGGCTCAAACTGCGGAAAAATATGTCCGTAAGGGCGACAAACTCTACATAGAAGGA
AAAATCCGTAGCCGTTCATACGATGATCAGAATGGTATAAAACGCACCATTGTCGAGATTTTTGCTGATAATATGGAGAT
GTTGACCCCGCGTAACGCCTCACAGCAACCGGGTACGGGATATGTGCAGGCACAAGCGGTATCCCGGCAGCAGATGTCTG
CACAAGTAGCTCCGCAACAACAGCAAACTTCGGATAATAGCCTGACAGACGATTTACCTTTTTAA
ATGTCAGTAAATAAAGTCATTTTGATTGGAAATGTAGGAAAGGACCCTGATGTGAGATATTTGGATACCGGCATTGCCGT
TGCCACTTTCTCGTTGGCTACCACCGATCGTGCCTATACGTTGCAGAATGGAACACAGGTTCCCGAACGTACGGAATGGC
ATAATATCGTGTTATGGAGAGGGCTGGCTCAAACTGCGGAAAAATATGTCCGTAAGGGCGACAAACTCTACATAGAAGGA
AAAATCCGTAGCCGTTCATACGATGATCAGAATGGTATAAAACGCACCATTGTCGAGATTTTTGCTGATAATATGGAGAT
GTTGACCCCGCGTAACGCCTCACAGCAACCGGGTACGGGATATGTGCAGGCACAAGCGGTATCCCGGCAGCAGATGTCTG
CACAAGTAGCTCCGCAACAACAGCAAACTTCGGATAATAGCCTGACAGACGATTTACCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
42.045 |
100 |
0.481 |
| ssb | Neisseria gonorrhoeae MS11 |
46.853 |
92.857 |
0.435 |
| ssb | Glaesserella parasuis strain SC1401 |
37.222 |
100 |
0.435 |
| ssb | Vibrio cholerae strain A1552 |
37.931 |
100 |
0.429 |