Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | MDS_RS13645 | Genome accession | NC_015410 |
| Coordinates | 2958496..2959716 (-) | Length | 406 a.a. |
| NCBI ID | WP_193384039.1 | Uniprot ID | - |
| Organism | Ectopseudomonas mendocina NK-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2953496..2964716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MDS_RS13630 (MDS_2692) | - | 2954342..2955241 (+) | 900 | WP_013715795.1 | hydroxymethylglutaryl-CoA lyase | - |
| MDS_RS13635 (MDS_2693) | - | 2955538..2957493 (+) | 1956 | WP_013715796.1 | acetoacetate--CoA ligase | - |
| MDS_RS13640 (MDS_2694) | - | 2957562..2958311 (+) | 750 | WP_013715797.1 | ABC transporter substrate-binding protein | - |
| MDS_RS13645 (MDS_2695) | pilU | 2958496..2959716 (-) | 1221 | WP_193384039.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| MDS_RS13650 (MDS_2696) | - | 2959866..2960144 (+) | 279 | WP_013715799.1 | peptidylprolyl isomerase | - |
| MDS_RS13655 (MDS_2697) | - | 2960152..2961063 (-) | 912 | WP_013715800.1 | LysR family transcriptional regulator | - |
| MDS_RS13660 (MDS_2698) | - | 2961132..2961611 (-) | 480 | WP_013715801.1 | nuclear transport factor 2 family protein | - |
| MDS_RS13665 (MDS_2699) | - | 2961621..2962211 (-) | 591 | WP_013715802.1 | TetR/AcrR family transcriptional regulator | - |
| MDS_RS13670 (MDS_2700) | - | 2962372..2963292 (-) | 921 | WP_013715803.1 | LysR family transcriptional regulator | - |
| MDS_RS13675 (MDS_2701) | - | 2963433..2963828 (+) | 396 | WP_041769466.1 | RidA family protein | - |
| MDS_RS13680 (MDS_2702) | nfsB | 2964053..2964703 (-) | 651 | WP_013715805.1 | oxygen-insensitive NAD(P)H nitroreductase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44711.95 Da Isoelectric Point: 5.8897
>NTDB_id=40406 MDS_RS13645 WP_193384039.1 2958496..2959716(-) (pilU) [Ectopseudomonas mendocina NK-01]
MDLHAMLKILSSQDGSDLYLSTGAPPCAKFNGVLKALSQEPIKAGDVAAIADSIMDSAQREEFERELEMNLAISLAGVGR
FRINIFKQRNEVSIVARNIKLDIPRFEDLKLPEVLLDTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEDRRPQLLNDLGNNLKAFVSQRLVKTVDGKRRAAVEVMLGTPTVRDLIKRNEFSELKEIMEKSKNLGMQTFDQAL
IDLVHEGAIDEEEAVKNADSANNVRLKLKLYRDNPANTRPAPAAAAPTAAPVAAPKAASAGDWGLELKLEDIEEEQPPED
PGRQGI
MDLHAMLKILSSQDGSDLYLSTGAPPCAKFNGVLKALSQEPIKAGDVAAIADSIMDSAQREEFERELEMNLAISLAGVGR
FRINIFKQRNEVSIVARNIKLDIPRFEDLKLPEVLLDTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEDRRPQLLNDLGNNLKAFVSQRLVKTVDGKRRAAVEVMLGTPTVRDLIKRNEFSELKEIMEKSKNLGMQTFDQAL
IDLVHEGAIDEEEAVKNADSANNVRLKLKLYRDNPANTRPAPAAAAPTAAPVAAPKAASAGDWGLELKLEDIEEEQPPED
PGRQGI
Nucleotide
Download Length: 1221 bp
>NTDB_id=40406 MDS_RS13645 WP_193384039.1 2958496..2959716(-) (pilU) [Ectopseudomonas mendocina NK-01]
ATGGATCTCCACGCAATGCTGAAAATCCTGTCCAGTCAGGATGGCTCCGATCTGTATCTGTCCACCGGCGCGCCGCCTTG
CGCCAAGTTCAACGGCGTGCTCAAGGCGCTGAGCCAGGAGCCGATTAAGGCGGGCGATGTGGCGGCCATTGCTGATTCGA
TCATGGATAGCGCGCAGCGCGAGGAGTTCGAGCGCGAACTGGAGATGAACCTGGCGATTTCCCTGGCTGGCGTAGGGCGT
TTTCGCATCAACATCTTCAAGCAACGCAATGAGGTGTCCATCGTCGCGCGCAACATCAAGCTGGATATTCCGCGCTTCGA
GGACCTCAAATTGCCCGAGGTGCTGCTCGACACGGTGATGGAGAAACGCGGCCTGGTGCTGTTCGTTGGCGGCACCGGCT
CGGGCAAGTCGACCTCCCTGGCGGCACTGATCGACTACCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAAGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCGATCATCAACCAGCGCGAGGTGGGCGTGGACACGCGCAGCTTCCATGC
CGCGCTGAAGAACACCTTGCGTCAGGCGCCGGACGTGATCCTGATCGGTGAGATCCGCGACCGCGAAACCATGGAGCACG
CCCTGGCCTTTGCTGATACCGGGCACCTGGCGATCTCCACTTTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTTCCGGAAGACCGCCGCCCTCAGTTGCTCAACGACCTGGGTAACAACCTCAAGGCGTTCGTTTCCCAGCG
CCTGGTCAAGACCGTCGATGGCAAGCGCCGCGCAGCAGTGGAGGTGATGCTGGGTACGCCGACGGTGCGCGACCTGATCA
AACGCAACGAATTCTCCGAGCTCAAGGAGATCATGGAGAAATCCAAGAACCTCGGCATGCAGACCTTCGACCAGGCGCTG
ATCGATCTGGTGCACGAAGGCGCAATCGATGAAGAAGAAGCGGTGAAGAACGCCGACTCGGCGAACAACGTGCGTCTGAA
ACTCAAGCTCTATCGCGACAATCCGGCCAATACCAGGCCTGCACCCGCCGCGGCAGCGCCGACAGCTGCGCCGGTCGCTG
CACCGAAGGCCGCCTCGGCAGGCGATTGGGGTCTGGAGCTCAAGCTGGAGGATATCGAGGAGGAGCAGCCGCCGGAGGAC
CCGGGACGGCAGGGGATTTAG
ATGGATCTCCACGCAATGCTGAAAATCCTGTCCAGTCAGGATGGCTCCGATCTGTATCTGTCCACCGGCGCGCCGCCTTG
CGCCAAGTTCAACGGCGTGCTCAAGGCGCTGAGCCAGGAGCCGATTAAGGCGGGCGATGTGGCGGCCATTGCTGATTCGA
TCATGGATAGCGCGCAGCGCGAGGAGTTCGAGCGCGAACTGGAGATGAACCTGGCGATTTCCCTGGCTGGCGTAGGGCGT
TTTCGCATCAACATCTTCAAGCAACGCAATGAGGTGTCCATCGTCGCGCGCAACATCAAGCTGGATATTCCGCGCTTCGA
GGACCTCAAATTGCCCGAGGTGCTGCTCGACACGGTGATGGAGAAACGCGGCCTGGTGCTGTTCGTTGGCGGCACCGGCT
CGGGCAAGTCGACCTCCCTGGCGGCACTGATCGACTACCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAAGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCGATCATCAACCAGCGCGAGGTGGGCGTGGACACGCGCAGCTTCCATGC
CGCGCTGAAGAACACCTTGCGTCAGGCGCCGGACGTGATCCTGATCGGTGAGATCCGCGACCGCGAAACCATGGAGCACG
CCCTGGCCTTTGCTGATACCGGGCACCTGGCGATCTCCACTTTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTTCCGGAAGACCGCCGCCCTCAGTTGCTCAACGACCTGGGTAACAACCTCAAGGCGTTCGTTTCCCAGCG
CCTGGTCAAGACCGTCGATGGCAAGCGCCGCGCAGCAGTGGAGGTGATGCTGGGTACGCCGACGGTGCGCGACCTGATCA
AACGCAACGAATTCTCCGAGCTCAAGGAGATCATGGAGAAATCCAAGAACCTCGGCATGCAGACCTTCGACCAGGCGCTG
ATCGATCTGGTGCACGAAGGCGCAATCGATGAAGAAGAAGCGGTGAAGAACGCCGACTCGGCGAACAACGTGCGTCTGAA
ACTCAAGCTCTATCGCGACAATCCGGCCAATACCAGGCCTGCACCCGCCGCGGCAGCGCCGACAGCTGCGCCGGTCGCTG
CACCGAAGGCCGCCTCGGCAGGCGATTGGGGTCTGGAGCTCAAGCTGGAGGATATCGAGGAGGAGCAGCCGCCGGAGGAC
CCGGGACGGCAGGGGATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.125 |
86.453 |
0.485 |
| pilU | Acinetobacter baylyi ADP1 |
51.989 |
86.7 |
0.451 |
| pilU | Vibrio cholerae strain A1552 |
51.558 |
86.946 |
0.448 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.541 |
96.552 |
0.382 |