Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MDS_RS05270 Genome accession   NC_015410
Coordinates   1157713..1159053 (-) Length   446 a.a.
NCBI ID   WP_013714192.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina NK-01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152713..1164053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS05240 (MDS_1047) - 1153616..1154170 (-) 555 WP_013714186.1 PilX N-terminal domain-containing pilus assembly protein -
  MDS_RS05245 (MDS_1048) - 1154167..1154889 (-) 723 WP_013714187.1 PilW family protein -
  MDS_RS05250 (MDS_1049) pilV 1154889..1155404 (-) 516 WP_013714188.1 type IV pilus modification protein PilV -
  MDS_RS05255 (MDS_1050) - 1155401..1155889 (-) 489 WP_013714189.1 GspH/FimT family pseudopilin -
  MDS_RS05260 (MDS_1051) - 1156005..1156508 (-) 504 WP_041769348.1 GspH/FimT family pseudopilin -
  MDS_RS05265 (MDS_1052) thiO 1156599..1157696 (+) 1098 WP_041769349.1 glycine oxidase ThiO -
  MDS_RS05270 (MDS_1053) pilR 1157713..1159053 (-) 1341 WP_013714192.1 sigma-54 dependent transcriptional regulator Regulator
  MDS_RS05275 (MDS_1054) pilS 1159056..1160648 (-) 1593 WP_013714193.1 PAS domain-containing sensor histidine kinase Regulator
  MDS_RS05280 (MDS_1055) - 1160638..1160874 (-) 237 WP_013714194.1 PP0621 family protein -
  MDS_RS05285 (MDS_1056) - 1161070..1162062 (-) 993 WP_013714195.1 outer membrane protein assembly factor BamD -
  MDS_RS05290 (MDS_1057) rluD 1162201..1163175 (+) 975 WP_041769670.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MDS_RS05295 (MDS_1058) pgeF 1163172..1163903 (+) 732 WP_013714197.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49715.05 Da        Isoelectric Point: 5.4435

>NTDB_id=40396 MDS_RS05270 WP_013714192.1 1157713..1159053(-) (pilR) [Ectopseudomonas mendocina NK-01]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLAEVM
LARLADGTGLAAANLHPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITPGDLRLADASGPGNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=40396 MDS_RS05270 WP_013714192.1 1157713..1159053(-) (pilR) [Ectopseudomonas mendocina NK-01]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGTTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAAGAGGCGCGCGAGTGGCTGGCGCGCGAGCCCTTCGACTTGTGCTTGACCG
ATATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCTTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGTGGA
CCTCGGCCGGCTGCGCGAACTGGTGGCGACCGCCCTGCGCATTCGCGCACCCGAAGGTGAGGAAACACCAGTCGATAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGTAAGCAGATCCTGAAGCTTTCGCGCAGTCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCCTGATCCATGAGCAGGGCCCACGCATCGAACAACCGTT
CGTGCCGGTCAACTGCGGCGCGATACCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTGCCG
TTGCCAATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGGCCGTGCGCGCCGTCGGTGGCCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCCGCGGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTGCCACCACTGCGTGAACGTCGCGAGGACATTGCCCTGCTGGCTGAGGTGATG
CTTGCACGCCTGGCCGATGGCACCGGCCTGGCAGCTGCCAATCTGCACCCCGATGCACTGGAAAAGCTGAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTAGAGAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATAACACCCG
GCGACCTACGCCTGGCCGACGCCAGCGGCCCTGGCAACGAAGGAGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCTTGGAAGAAACACGCTGGAATCGCACGGCCGCGGCCCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTACCGCCTGAAGAAGCTGGGCATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511
  luxO Vibrio cholerae strain A1552

38.117

100

0.381

Multiple sequence alignment