Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GM418_RS01820 Genome accession   NZ_CP046401
Coordinates   414078..414533 (-) Length   151 a.a.
NCBI ID   WP_158862571.1    Uniprot ID   A0A6I6JXK4
Organism   Maribellus comscasis strain WC007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 409078..419533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM418_RS01795 (GM418_01795) pgl 409178..409909 (-) 732 WP_158862563.1 6-phosphogluconolactonase -
  GM418_RS01800 (GM418_01800) zwf 409953..411455 (-) 1503 WP_158862565.1 glucose-6-phosphate dehydrogenase -
  GM418_RS01805 (GM418_01805) - 411462..412106 (-) 645 WP_158862567.1 4'-phosphopantetheinyl transferase superfamily protein -
  GM418_RS01810 (GM418_01810) gldD 412106..412696 (-) 591 WP_158862569.1 gliding motility lipoprotein GldD -
  GM418_RS01815 (GM418_01815) gldE 412729..414060 (-) 1332 WP_246222806.1 gliding motility-associated protein GldE -
  GM418_RS01820 (GM418_01820) ssb 414078..414533 (-) 456 WP_158862571.1 single-stranded DNA-binding protein Machinery gene
  GM418_RS01825 (GM418_01825) mutY 414595..415662 (-) 1068 WP_158862573.1 A/G-specific adenine glycosylase -
  GM418_RS01830 (GM418_01830) - 415798..416082 (+) 285 WP_158862575.1 HU family DNA-binding protein -
  GM418_RS31990 - 416089..416181 (+) 93 WP_202914927.1 AURKAIP1/COX24 domain-containing protein -
  GM418_RS01835 (GM418_01835) - 416304..417854 (+) 1551 WP_158862577.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 17027.57 Da        Isoelectric Point: 4.6039

>NTDB_id=403944 GM418_RS01820 WP_158862571.1 414078..414533(-) (ssb) [Maribellus comscasis strain WC007]
MSVNKVILVGNVGKDPEVRHLDSGVAVANFPLATSETYLAKNGDRVTTTEWHNIVLWRGLADVAEKYVTKGRQLYIEGRI
RTRSYDDKDGNKRYITEIYGDVMQMLGSRNDNQSSDNQSSQYNENQNSSSSKGNQKEPDFEESEGDDDLPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=403944 GM418_RS01820 WP_158862571.1 414078..414533(-) (ssb) [Maribellus comscasis strain WC007]
ATGTCAGTAAACAAAGTTATTTTAGTAGGAAATGTTGGAAAAGATCCGGAAGTAAGACATCTTGATTCGGGAGTTGCCGT
TGCAAATTTCCCATTGGCTACTTCAGAAACTTATTTAGCAAAAAACGGAGACAGGGTTACAACCACAGAATGGCACAATA
TTGTGCTTTGGCGCGGGCTTGCTGATGTGGCAGAAAAATACGTTACAAAAGGGCGGCAATTGTATATCGAGGGGAGAATC
AGAACCCGATCATACGATGATAAGGATGGAAATAAGAGATATATAACTGAAATATATGGTGACGTAATGCAAATGCTTGG
TAGTAGGAATGACAATCAGTCGTCAGATAACCAGTCGTCGCAGTACAATGAAAATCAAAATTCGTCGTCTTCCAAGGGGA
ATCAAAAAGAACCTGATTTTGAAGAATCGGAAGGCGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6JXK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

41.243

100

0.483
  ssb Vibrio cholerae strain A1552

40.116

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.775

94.04

0.43
  ssb Neisseria meningitidis MC58

46.667

89.404

0.417

Multiple sequence alignment