Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GK020_RS14860 Genome accession   NZ_CP046392
Coordinates   3049689..3050255 (-) Length   188 a.a.
NCBI ID   WP_045795510.1    Uniprot ID   A0AAW8Z9U3
Organism   Acinetobacter indicus strain WMB-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3035486..3059353 3049689..3050255 within 0


Gene organization within MGE regions


Location: 3035486..3059353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS14770 - 3035486..3035707 (+) 222 WP_005180724.1 hypothetical protein -
  GK020_RS14775 - 3035742..3036832 (-) 1091 Protein_2873 IS3 family transposase -
  GK020_RS14780 - 3036950..3037165 (-) 216 WP_019385588.1 helix-turn-helix domain-containing protein -
  GK020_RS14785 - 3037262..3037750 (+) 489 WP_228716181.1 hypothetical protein -
  GK020_RS14790 - 3037777..3037974 (+) 198 Protein_2876 helix-turn-helix domain-containing protein -
  GK020_RS14795 tnpC 3038006..3039610 (-) 1605 WP_156188713.1 IS66 family transposase -
  GK020_RS14800 tnpB 3039685..3040020 (-) 336 WP_160243458.1 IS66 family insertion sequence element accessory protein TnpB -
  GK020_RS14805 tnpA 3040017..3040400 (-) 384 WP_156188711.1 IS66-like element accessory protein TnpA -
  GK020_RS14810 - 3040507..3041268 (+) 762 Protein_2880 integrase core domain-containing protein -
  GK020_RS14815 - 3041374..3041793 (-) 420 WP_104988039.1 hypothetical protein -
  GK020_RS14820 - 3041795..3042181 (-) 387 Protein_2882 integrase -
  GK020_RS14825 istB 3042255..3043028 (-) 774 WP_001053379.1 IS21-like element ISAba8 family helper ATPase IstB -
  GK020_RS14830 istA 3043028..3044047 (-) 1020 WP_104988188.1 IS21-like element ISAba8 family transposase -
  GK020_RS14835 - 3044129..3045877 (-) 1749 Protein_2885 integrase -
  GK020_RS14840 - 3045870..3047426 (-) 1557 WP_156189618.1 site-specific integrase -
  GK020_RS14845 - 3047423..3048025 (-) 603 Protein_2887 site-specific integrase -
  GK020_RS14850 - 3048067..3048889 (+) 823 WP_156189619.1 IS5 family transposase -
  GK020_RS14855 - 3048885..3049532 (-) 648 Protein_2889 site-specific integrase -
  GK020_RS14860 ssb 3049689..3050255 (-) 567 WP_045795510.1 single-stranded DNA-binding protein Machinery gene
  GK020_RS14865 - 3050307..3051671 (-) 1365 WP_104470282.1 MFS transporter -
  GK020_RS14870 - 3051824..3052012 (-) 189 Protein_2892 DUF475 domain-containing protein -
  GK020_RS14875 - 3052109..3053269 (+) 1161 WP_104989389.1 IS4-like element ISAbe18 family transposase -
  GK020_RS14880 - 3053226..3054191 (-) 966 Protein_2894 DUF475 domain-containing protein -
  GK020_RS14885 tenA 3054462..3055139 (+) 678 WP_104988034.1 thiaminase II -
  GK020_RS14890 uvrA 3055389..3058220 (+) 2832 WP_156189620.1 excinuclease ABC subunit UvrA -
  GK020_RS15890 - 3058322..3058516 (+) 195 WP_171501532.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20667.41 Da        Isoelectric Point: 6.4819

>NTDB_id=403819 GK020_RS14860 WP_045795510.1 3049689..3050255(-) (ssb) [Acinetobacter indicus strain WMB-7]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFNQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=403819 GK020_RS14860 WP_045795510.1 3049689..3050255(-) (ssb) [Acinetobacter indicus strain WMB-7]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGATCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAACGGATTTAACCAGCCGCGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAGGCTCAAGGCGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACC
ATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.646

100

0.548
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment