Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GK020_RS14130 Genome accession   NZ_CP046392
Coordinates   2908972..2909499 (-) Length   175 a.a.
NCBI ID   WP_035363443.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2903972..2914499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS14110 - 2904240..2905076 (-) 837 WP_156189587.1 hypothetical protein -
  GK020_RS14115 aroB 2905089..2906171 (-) 1083 WP_045795260.1 3-dehydroquinate synthase -
  GK020_RS14120 aroK 2906194..2906736 (-) 543 WP_016658449.1 shikimate kinase AroK -
  GK020_RS14125 pilQ 2906773..2908911 (-) 2139 WP_171501550.1 type IV pilus secretin PilQ Machinery gene
  GK020_RS14130 pilP 2908972..2909499 (-) 528 WP_035363443.1 pilus assembly protein PilP Machinery gene
  GK020_RS14135 pilO 2909499..2910218 (-) 720 WP_045795258.1 type 4a pilus biogenesis protein PilO Machinery gene
  GK020_RS14140 pilN 2910215..2910850 (-) 636 WP_156189589.1 PilN domain-containing protein Machinery gene
  GK020_RS14145 pilM 2910850..2911908 (-) 1059 WP_045795257.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19257.41 Da        Isoelectric Point: 7.1666

>NTDB_id=403815 GK020_RS14130 WP_035363443.1 2908972..2909499(-) (pilP) [Acinetobacter indicus strain WMB-7]
MKFEKLSLVLVLGLLAAGCDSRIDAVNAQMAEIRNQPPLPIEPAPTFEPAPVFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYALETLSMKGSMRGQRGEIQALIQTPDGEIERIQRGSYMGLNHGRVINITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=403815 GK020_RS14130 WP_035363443.1 2908972..2909499(-) (pilP) [Acinetobacter indicus strain WMB-7]
ATGAAATTTGAAAAACTTTCGTTGGTTCTGGTGTTGGGCCTACTGGCTGCAGGTTGTGATTCACGTATTGATGCCGTGAA
TGCACAAATGGCAGAAATCCGTAATCAGCCGCCGTTACCGATTGAACCGGCACCGACTTTTGAGCCAGCACCTGTATTTA
ACTATGCAGCACATCAGCTGAAAAGCCCGTTTATGCCAAGTTCTCTGGCGGCCGAGCTAAAGATTATGGCCGGCAAGCGG
GTTTATCCAAACCTGTCACGCCAGTTGCAGCCTTTAGAAAGCTATGCACTGGAAACCTTAAGCATGAAAGGCAGCATGCG
CGGGCAACGCGGTGAGATTCAGGCCCTGATTCAAACTCCAGATGGGGAAATTGAACGGATTCAGCGCGGCAGCTATATGG
GCTTGAATCATGGTCGGGTCATCAATATTACGCCGACACAAATTGACTTAATTGAGATTATTCCAGATGGTCGCGAAGGG
TATGTTGAACGTCCAAGAAGTCTAGTACTGATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

74.857

100

0.749
  comL Acinetobacter baylyi ADP1

71.856

95.429

0.686

Multiple sequence alignment