Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GK020_RS14140 Genome accession   NZ_CP046392
Coordinates   2910215..2910850 (-) Length   211 a.a.
NCBI ID   WP_156189589.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2905215..2915850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS14120 aroK 2906194..2906736 (-) 543 WP_016658449.1 shikimate kinase AroK -
  GK020_RS14125 pilQ 2906773..2908911 (-) 2139 WP_171501550.1 type IV pilus secretin PilQ Machinery gene
  GK020_RS14130 pilP 2908972..2909499 (-) 528 WP_035363443.1 pilus assembly protein PilP Machinery gene
  GK020_RS14135 pilO 2909499..2910218 (-) 720 WP_045795258.1 type 4a pilus biogenesis protein PilO Machinery gene
  GK020_RS14140 pilN 2910215..2910850 (-) 636 WP_156189589.1 PilN domain-containing protein Machinery gene
  GK020_RS14145 pilM 2910850..2911908 (-) 1059 WP_045795257.1 pilus assembly protein PilM Machinery gene
  GK020_RS14150 ponA 2912079..2914649 (+) 2571 WP_104988081.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23526.94 Da        Isoelectric Point: 6.9899

>NTDB_id=403817 GK020_RS14140 WP_156189589.1 2910215..2910850(-) (pilN) [Acinetobacter indicus strain WMB-7]
MAKINLLPWRDELREKRKKEFIAVCIGAALIGMLAVTLAWFYYNHKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPVAVRLVDELVRVTPSSMYLTKVARIGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
VEENQNKAPSSVVPRVEESYGSFVVTADLDEIALPGTAPASGTQATAGAVQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=403817 GK020_RS14140 WP_156189589.1 2910215..2910850(-) (pilN) [Acinetobacter indicus strain WMB-7]
ATGGCAAAAATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAAAAACGAAAAAAAGAATTTATTGCGGTTTGTATTGG
GGCTGCATTGATTGGGATGCTGGCCGTCACGCTGGCATGGTTCTATTACAACCATAAACTTCAGGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACCAACCAGAATCTGGATGTACAGTTAAAGTCGCTGGAAGGCCTGCAAGAGCAGCGTAATGCT
ATTGTCGAGCGTATGAAGCTGATTCAGGGGCTGCAAAGTCAGCGTCCGGTGGCGGTACGTCTGGTCGATGAGCTGGTACG
CGTCACCCCAAGCAGCATGTATTTGACTAAAGTGGCCCGTATTGGCAATAAATTTACCTTTGAAGGCAAGGCTGAAAGTC
CAAACACCGTGGCAGAGTTCCTGCGTAATCTGGAAGCATCGCCATGGTATCGCAATGCCTTCATGAATTCTTTCTTGGCC
GTTGAAGAAAATCAAAACAAGGCACCAAGTTCGGTTGTTCCACGGGTAGAAGAAAGCTATGGTAGCTTCGTGGTAACGGC
AGATTTGGATGAAATTGCACTTCCAGGCACAGCACCTGCGTCTGGTACTCAAGCAACAGCGGGGGCAGTACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.616

100

0.706
  comN Acinetobacter baylyi ADP1

70.142

100

0.701

Multiple sequence alignment