Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   GL187_RS09905 Genome accession   NZ_CP046379
Coordinates   1931703..1932029 (-) Length   108 a.a.
NCBI ID   WP_000738625.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 563     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1926703..1937029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS09865 (GL187_09985) rnpA 1926728..1927099 (-) 372 WP_000739247.1 ribonuclease P protein component -
  GL187_RS11460 - 1927116..1927247 (-) 132 WP_000768904.1 hypothetical protein -
  GL187_RS09870 (GL187_09990) - 1927248..1928438 (-) 1191 WP_000167765.1 acetate kinase -
  GL187_RS09875 (GL187_09995) comYH 1928489..1929442 (-) 954 WP_000345122.1 class I SAM-dependent methyltransferase Machinery gene
  GL187_RS09880 (GL187_10005) - 1929503..1930090 (-) 588 WP_000679779.1 class I SAM-dependent methyltransferase -
  GL187_RS09885 (GL187_10010) comGG/cglG 1930193..1930639 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  GL187_RS09890 (GL187_10015) comGF/cglF 1930617..1931078 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  GL187_RS09895 (GL187_10020) comGE/cglE 1931041..1931343 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  GL187_RS09900 (GL187_10025) comGD/cglD 1931306..1931710 (-) 405 WP_061647912.1 competence type IV pilus minor pilin ComGD Machinery gene
  GL187_RS09905 (GL187_10030) comGC/cglC 1931703..1932029 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  GL187_RS09910 (GL187_10035) comGB/cglB 1932031..1933047 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  GL187_RS09915 (GL187_10040) comGA/cglA/cilD 1932995..1933936 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  GL187_RS09920 (GL187_10045) - 1934011..1934376 (-) 366 WP_000286415.1 DUF1033 family protein -
  GL187_RS09925 (GL187_10050) - 1934527..1935585 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -
  GL187_RS09930 (GL187_10055) nagA 1935748..1936899 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12143.28 Da        Isoelectric Point: 10.0055

>NTDB_id=403715 GL187_RS09905 WP_000738625.1 1931703..1932029(-) (comGC/cglC) [Streptococcus pneumoniae strain 563]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLDKNEDATLSKLQG
DGRITEEQVKAYNEYYTKNGGANRKVND

Nucleotide


Download         Length: 327 bp        

>NTDB_id=403715 GL187_RS09905 WP_000738625.1 1931703..1932029(-) (comGC/cglC) [Streptococcus pneumoniae strain 563]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAGATGTTAGTAGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTGGATAAAAATGAAGATGCTACTCTGAGCAAGTTACAAGGA
GATGGGCGCATCACGGAAGAACAGGTTAAAGCTTATAATGAATACTATACTAAAAACGGAGGAGCAAATCGTAAAGTCAA
TGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

95.37

100

0.954
  comGC/cglC Streptococcus pneumoniae Rx1

92.593

100

0.926
  comGC/cglC Streptococcus pneumoniae D39

92.593

100

0.926
  comGC/cglC Streptococcus pneumoniae R6

92.593

100

0.926
  comGC/cglC Streptococcus pneumoniae TIGR4

92.593

100

0.926
  comGC/cglC Streptococcus mitis NCTC 12261

92.857

90.741

0.843
  comYC Streptococcus gordonii str. Challis substr. CH1

67.961

95.37

0.648
  comYC Streptococcus mutans UA140

62.745

94.444

0.593
  comYC Streptococcus mutans UA159

62.745

94.444

0.593
  comGC Lactococcus lactis subsp. cremoris KW2

56.863

94.444

0.537
  comYC Streptococcus suis isolate S10

64.773

81.481

0.528
  comGC Staphylococcus aureus MW2

47.674

79.63

0.38
  comGC Staphylococcus aureus N315

47.674

79.63

0.38

Multiple sequence alignment