Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GMX02_RS03195 Genome accession   NZ_CP046378
Coordinates   725024..725740 (+) Length   238 a.a.
NCBI ID   WP_044735256.1    Uniprot ID   -
Organism   Shewanella algae strain RQs-106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 720024..730740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMX02_RS03180 (GMX02_03180) - 720221..720571 (-) 351 WP_129586019.1 hypothetical protein -
  GMX02_RS03185 (GMX02_03185) uvrA 720579..723401 (-) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  GMX02_RS03190 (GMX02_03190) - 723622..724989 (+) 1368 WP_156018659.1 MFS transporter -
  GMX02_RS03195 (GMX02_03195) ssb 725024..725740 (+) 717 WP_044735256.1 single-stranded DNA-binding protein Machinery gene
  GMX02_RS03200 (GMX02_03200) - 725804..726913 (-) 1110 WP_144163969.1 HisA/HisF-related TIM barrel protein -
  GMX02_RS03205 (GMX02_03205) - 727039..727953 (+) 915 WP_144163968.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26172.53 Da        Isoelectric Point: 5.9130

>NTDB_id=403634 GMX02_RS03195 WP_044735256.1 725024..725740(+) (ssb) [Shewanella algae strain RQs-106]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=403634 GMX02_RS03195 WP_044735256.1 725024..725740(+) (ssb) [Shewanella algae strain RQs-106]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGTAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAACAGCGGCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408

Multiple sequence alignment