Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SALIVA_RS10330 Genome accession   NC_017595
Coordinates   773168..773824 (-) Length   218 a.a.
NCBI ID   WP_080568068.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 768168..778824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS03790 (SALIVA_0773) holA 769918..770952 (+) 1035 WP_014634245.1 DNA polymerase III subunit delta -
  SALIVA_RS03795 (SALIVA_0774) sodA 771048..771653 (+) 606 WP_004182735.1 superoxide dismutase SodA -
  SALIVA_RS03800 (SALIVA_0775) - 771751..773136 (+) 1386 WP_014634246.1 serine hydrolase -
  SALIVA_RS10330 cclA/cilC 773168..773824 (-) 657 WP_080568068.1 A24 family peptidase Machinery gene
  SALIVA_RS03805 (SALIVA_0778) - 773934..774455 (+) 522 WP_014634248.1 Dps family protein -
  SALIVA_RS03810 (SALIVA_0779) - 774543..774980 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  SALIVA_RS03815 (SALIVA_0780) - 775083..775289 (+) 207 WP_014634249.1 YqgQ family protein -
  SALIVA_RS03820 (SALIVA_0781) - 775282..776250 (+) 969 WP_014634250.1 ROK family glucokinase -
  SALIVA_RS03825 (SALIVA_0783) typA 776395..778245 (+) 1851 WP_002884130.1 translational GTPase TypA -
  SALIVA_RS03830 (SALIVA_0784) - 778265..778534 (+) 270 WP_002884134.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25103.48 Da        Isoelectric Point: 7.8971

>NTDB_id=40351 SALIVA_RS10330 WP_080568068.1 773168..773824(-) (cclA/cilC) [Streptococcus salivarius JIM8777]
MLSIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLCFFEIIPILSQLFLRSRCRSCQTPIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTVPLLFMGNYYLSFALGIILAILSYMKHLNIGEGDFL
YLASASLIFPFSKILLIIEIACLLGLAYFLLRRNLKECIAFVPFLFLGIVLLTFCSII

Nucleotide


Download         Length: 657 bp        

>NTDB_id=40351 SALIVA_RS10330 WP_080568068.1 773168..773824(-) (cclA/cilC) [Streptococcus salivarius JIM8777]
ATGTTAAGTATTATTTATTTTTTTCTAGGAGCCTCTTTAGGTTCATTTATCGGACTAATTTGTGATCGTTTTCCTGAAAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCACTGCAAGCATCAGTTGTGTTTTTTCGAGATAATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGACTCCTATCCCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTTCTATATTTTTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTCTATCAAT
TTTTGATTTGAAACATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACAGTCCCACTCTTATTCATGGGCAACTACT
ACCTCTCATTTGCCTTGGGGATAATCCTCGCCATCCTTTCTTATATGAAACATCTAAATATTGGGGAAGGAGATTTTCTC
TACTTAGCAAGTGCCTCCCTTATTTTCCCATTTTCAAAAATACTACTTATTATCGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATGCATCGCATTTGTCCCATTTCTTTTTCTAGGGATAGTACTTCTTACTT
TTTGTTCAATTATATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.908

100

0.399
  cclA/cilC Streptococcus pneumoniae TIGR4

39.908

100

0.399
  cclA/cilC Streptococcus pneumoniae Rx1

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae D39

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae R6

39.72

98.165

0.39
  cclA/cilC Streptococcus mitis NCTC 12261

38.991

100

0.39

Multiple sequence alignment