Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SALIVA_RS09720 Genome accession   NC_017595
Coordinates   2117011..2118012 (-) Length   333 a.a.
NCBI ID   WP_014635143.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2112011..2123012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09675 (SALIVA_1981) rplP 2112108..2112521 (-) 414 WP_000960950.1 50S ribosomal protein L16 -
  SALIVA_RS09680 (SALIVA_1982) rpsC 2112525..2113178 (-) 654 WP_002885727.1 30S ribosomal protein S3 -
  SALIVA_RS09685 (SALIVA_1983) rplV 2113191..2113535 (-) 345 WP_002887063.1 50S ribosomal protein L22 -
  SALIVA_RS09690 (SALIVA_1984) rpsS 2113551..2113829 (-) 279 WP_000533765.1 30S ribosomal protein S19 -
  SALIVA_RS09695 (SALIVA_1985) rplB 2113923..2114756 (-) 834 WP_002887065.1 50S ribosomal protein L2 -
  SALIVA_RS09700 (SALIVA_1986) - 2114774..2115070 (-) 297 WP_002887066.1 50S ribosomal protein L23 -
  SALIVA_RS09705 (SALIVA_1987) rplD 2115070..2115693 (-) 624 WP_014635142.1 50S ribosomal protein L4 -
  SALIVA_RS09710 (SALIVA_1988) rplC 2115718..2116344 (-) 627 WP_002885755.1 50S ribosomal protein L3 -
  SALIVA_RS09715 (SALIVA_1989) rpsJ 2116459..2116767 (-) 309 WP_002885653.1 30S ribosomal protein S10 -
  SALIVA_RS09720 (SALIVA_1990) ruvB 2117011..2118012 (-) 1002 WP_014635143.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SALIVA_RS09725 (SALIVA_1991) - 2118093..2119916 (-) 1824 WP_014635144.1 acyltransferase family protein -
  SALIVA_RS09730 (SALIVA_1992) - 2119913..2120323 (-) 411 WP_014635145.1 membrane protein -
  SALIVA_RS09735 (SALIVA_1993) - 2120320..2120754 (-) 435 WP_014635146.1 low molecular weight protein-tyrosine-phosphatase -
  SALIVA_RS09740 (SALIVA_1994) - 2121030..2122322 (-) 1293 WP_014632520.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37613.12 Da        Isoelectric Point: 4.5040

>NTDB_id=40346 SALIVA_RS09720 WP_014635143.1 2117011..2118012(-) (ruvB) [Streptococcus salivarius JIM8777]
MTRILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=40346 SALIVA_RS09720 WP_014635143.1 2117011..2118012(-) (ruvB) [Streptococcus salivarius JIM8777]
ATGACAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCACTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACCATGGCTTTTGTGATAGCTAATGAGATGGGCGTTAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTGGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATTGATA
TCATGATTGGTGCAGGCGAAACAAGTCGTAGTGTCCATCTAGAGTTACCACCTTTCACATTAGTAGGTGCAACTACTCGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGCTTTGGGATTAATGGTCATATGGAATATTATGAGCTACCAGATTTGAA
GGAAATTATTGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACGCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATTATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCGGTTGGTCTAGGTACCTTGTCGGTGAATATTGCAGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTACCTAATTCAAAAAGGATTCATTATGCGTACACGAACAGGTCGTGTTGCAACGGTTAAA
GCCTATGAACATATGGGGTACGACTACACTCAAGAAAGTTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

86.747

99.7

0.865
  ruvB Streptococcus pneumoniae R6

86.446

99.7

0.862
  ruvB Streptococcus pneumoniae D39

86.446

99.7

0.862
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.204

96.997

0.565
  ruvB Synechocystis sp. PCC 6803

51.118

93.994

0.48
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48

Multiple sequence alignment