Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   GL186_RS10865 Genome accession   NZ_CP046358
Coordinates   2121186..2121944 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 566     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2116186..2126944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL186_RS10835 (GL186_11025) comE 2116783..2117535 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  GL186_RS10840 (GL186_11030) comD/comD2 2117532..2118857 (-) 1326 WP_024477997.1 competence system sensor histidine kinase ComD Regulator
  GL186_RS10845 (GL186_11035) comC/comC2 2118878..2119003 (-) 126 WP_000799694.1 competence-stimulating peptide ComC Regulator
  GL186_RS10855 (GL186_11045) rlmH 2119285..2119764 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GL186_RS10860 (GL186_11050) htrA 2119947..2121128 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  GL186_RS10865 (GL186_11055) spo0J 2121186..2121944 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  GL186_RS10870 (GL186_11060) dnaA 2122157..2123518 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -

Sequence


Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=403302 GL186_RS10865 WP_000410383.1 2121186..2121944(+) (spo0J) [Streptococcus pneumoniae strain 566]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=403302 GL186_RS10865 WP_000410383.1 2121186..2121944(+) (spo0J) [Streptococcus pneumoniae strain 566]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504


Multiple sequence alignment