Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   GL186_RS09825 Genome accession   NZ_CP046358
Coordinates   1914573..1914965 (-) Length   130 a.a.
NCBI ID   WP_001818028.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 566     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1909573..1919965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL186_RS09800 (GL186_09970) - 1910256..1911080 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  GL186_RS09805 (GL186_09975) rnpA 1911055..1911426 (-) 372 WP_000739247.1 ribonuclease P protein component -
  GL186_RS11380 - 1911443..1911574 (-) 132 WP_000768904.1 hypothetical protein -
  GL186_RS09810 (GL186_09980) - 1911575..1912765 (-) 1191 WP_000167765.1 acetate kinase -
  GL186_RS09815 (GL186_09985) comYH 1912816..1913769 (-) 954 WP_000345122.1 class I SAM-dependent methyltransferase Machinery gene
  GL186_RS09820 (GL186_09995) - 1913830..1914417 (-) 588 WP_000679779.1 class I SAM-dependent methyltransferase -
  GL186_RS09825 (GL186_10000) comGG/cglG 1914573..1914965 (-) 393 WP_001818028.1 competence type IV pilus minor pilin ComGG Machinery gene
  GL186_RS09830 (GL186_10005) comGF/cglF 1914943..1915404 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  GL186_RS09835 (GL186_10010) comGE/cglE 1915367..1915669 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  GL186_RS09840 (GL186_10015) comGD/cglD 1915632..1916036 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  GL186_RS09845 (GL186_10020) comGC/cglC 1916029..1916355 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  GL186_RS09850 (GL186_10025) comGB/cglB 1916357..1917373 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  GL186_RS09855 (GL186_10030) comGA/cglA/cilD 1917321..1918262 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  GL186_RS09860 (GL186_10035) - 1918337..1918702 (-) 366 WP_000286415.1 DUF1033 family protein -
  GL186_RS09865 (GL186_10040) - 1918853..1919911 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 130 a.a.        Molecular weight: 15071.47 Da        Isoelectric Point: 10.3982

>NTDB_id=403283 GL186_RS09825 WP_001818028.1 1914573..1914965(-) (comGG/cglG) [Streptococcus pneumoniae strain 566]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKIRREA

Nucleotide


Download         Length: 393 bp        

>NTDB_id=403283 GL186_RS09825 WP_001818028.1 1914573..1914965(-) (comGG/cglG) [Streptococcus pneumoniae strain 566]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAATCAGAAGAGAAGCCTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

90

0.854

  comGG/cglG Streptococcus pneumoniae Rx1

94.872

90

0.854

  comGG/cglG Streptococcus pneumoniae D39

94.872

90

0.854

  comGG/cglG Streptococcus pneumoniae R6

94.872

90

0.854

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

93.846

0.838

  comGG/cglG Streptococcus mitis SK321

86.066

93.846

0.808

  comYG Streptococcus mutans UA140

38.76

99.231

0.385

  comYG Streptococcus mutans UA159

38.76

99.231

0.385


Multiple sequence alignment