Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SAR11G3_RS05330 | Genome accession | NC_015380 |
| Coordinates | 1005074..1005529 (+) | Length | 151 a.a. |
| NCBI ID | WP_013695773.1 | Uniprot ID | F2I194 |
| Organism | Candidatus Pelagibacter sp. IMCC9063 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1000074..1010529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAR11G3_RS05320 (SAR11G3_01131) | secF | 1001198..1002103 (+) | 906 | WP_013695771.1 | protein translocase subunit SecF | - |
| SAR11G3_RS05325 (SAR11G3_01132) | uvrA | 1002117..1004981 (-) | 2865 | WP_013695772.1 | excinuclease ABC subunit UvrA | - |
| SAR11G3_RS05330 (SAR11G3_01133) | ssb | 1005074..1005529 (+) | 456 | WP_013695773.1 | single-stranded DNA-binding protein | Machinery gene |
| SAR11G3_RS05335 (SAR11G3_01134) | gyrA | 1005542..1008175 (+) | 2634 | WP_013695774.1 | DNA gyrase subunit A | - |
| SAR11G3_RS05340 (SAR11G3_01135) | coaD | 1008180..1008671 (+) | 492 | WP_013695775.1 | pantetheine-phosphate adenylyltransferase | - |
| SAR11G3_RS05345 (SAR11G3_01136) | - | 1008671..1009234 (+) | 564 | WP_013695776.1 | peptidylprolyl isomerase | - |
| SAR11G3_RS05350 (SAR11G3_01137) | tgt | 1009243..1010349 (+) | 1107 | WP_013695777.1 | tRNA guanosine(34) transglycosylase Tgt | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16246.08 Da Isoelectric Point: 5.2257
>NTDB_id=40295 SAR11G3_RS05330 WP_013695773.1 1005074..1005529(+) (ssb) [Candidatus Pelagibacter sp. IMCC9063]
MAGSLNKVLLIGRLGADPEIKQTQGGKGFASLSVATSENWKDKNSGEKKEKTEWHRVVIFNEGLVNVVKQYLKKGAQIYV
EGQLTTNKYTDNNGQEKYSTQIVLQGYNSTLKMLGGATGSPQGGVDQSSASSSLPSDDMSSPADLDDEVPF
MAGSLNKVLLIGRLGADPEIKQTQGGKGFASLSVATSENWKDKNSGEKKEKTEWHRVVIFNEGLVNVVKQYLKKGAQIYV
EGQLTTNKYTDNNGQEKYSTQIVLQGYNSTLKMLGGATGSPQGGVDQSSASSSLPSDDMSSPADLDDEVPF
Nucleotide
Download Length: 456 bp
>NTDB_id=40295 SAR11G3_RS05330 WP_013695773.1 1005074..1005529(+) (ssb) [Candidatus Pelagibacter sp. IMCC9063]
ATGGCGGGAAGTTTAAATAAAGTTTTATTAATTGGCAGACTAGGTGCCGATCCTGAAATCAAACAAACACAAGGTGGAAA
AGGTTTTGCAAGCTTAAGTGTAGCTACAAGTGAAAACTGGAAAGACAAAAACTCTGGAGAAAAAAAAGAAAAAACTGAAT
GGCATAGAGTTGTTATTTTTAATGAAGGCTTAGTCAATGTGGTTAAACAATACTTGAAAAAAGGTGCTCAAATCTATGTT
GAGGGACAATTGACTACTAACAAATACACAGACAACAATGGCCAAGAAAAATATAGCACACAAATAGTTCTTCAAGGATA
CAACTCAACATTAAAAATGCTTGGTGGAGCCACAGGATCTCCTCAGGGCGGAGTTGATCAATCTTCAGCTTCTAGCTCAC
TACCTTCTGACGATATGAGCTCTCCGGCCGATTTAGACGACGAAGTTCCTTTTTAA
ATGGCGGGAAGTTTAAATAAAGTTTTATTAATTGGCAGACTAGGTGCCGATCCTGAAATCAAACAAACACAAGGTGGAAA
AGGTTTTGCAAGCTTAAGTGTAGCTACAAGTGAAAACTGGAAAGACAAAAACTCTGGAGAAAAAAAAGAAAAAACTGAAT
GGCATAGAGTTGTTATTTTTAATGAAGGCTTAGTCAATGTGGTTAAACAATACTTGAAAAAAGGTGCTCAAATCTATGTT
GAGGGACAATTGACTACTAACAAATACACAGACAACAATGGCCAAGAAAAATATAGCACACAAATAGTTCTTCAAGGATA
CAACTCAACATTAAAAATGCTTGGTGGAGCCACAGGATCTCCTCAGGGCGGAGTTGATCAATCTTCAGCTTCTAGCTCAC
TACCTTCTGACGATATGAGCTCTCCGGCCGATTTAGACGACGAAGTTCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
42.775 |
100 |
0.49 |
| ssb | Neisseria meningitidis MC58 |
36.872 |
100 |
0.437 |
| ssb | Neisseria gonorrhoeae MS11 |
36.313 |
100 |
0.43 |
| ssb | Glaesserella parasuis strain SC1401 |
47.445 |
90.728 |
0.43 |