Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC30_RS25935 Genome accession   NZ_CP046346
Coordinates   2511740..2512285 (+) Length   181 a.a.
NCBI ID   WP_043281541.1    Uniprot ID   -
Organism   Burkholderia multivorans strain FDAARGOS_722     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2506740..2517285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC30_RS25925 (FOC30_25915) uvrA 2507286..2510171 (-) 2886 WP_155822720.1 excinuclease ABC subunit UvrA -
  FOC30_RS25930 (FOC30_25920) - 2510450..2511637 (+) 1188 WP_006398269.1 MFS transporter -
  FOC30_RS25935 (FOC30_25925) ssb 2511740..2512285 (+) 546 WP_043281541.1 single-stranded DNA-binding protein Machinery gene
  FOC30_RS25945 (FOC30_25930) - 2512919..2513200 (+) 282 WP_155822722.1 hypothetical protein -
  FOC30_RS25955 (FOC30_25940) - 2513468..2514094 (+) 627 WP_155822723.1 DNA-3-methyladenine glycosylase -
  FOC30_RS25960 (FOC30_25945) - 2514336..2515100 (+) 765 WP_060146473.1 ParA family protein -
  FOC30_RS25965 (FOC30_25950) phaP 2515557..2516138 (+) 582 WP_006398274.1 TIGR01841 family phasin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18647.44 Da        Isoelectric Point: 5.3476

>NTDB_id=402889 FOC30_RS25935 WP_043281541.1 2511740..2512285(+) (ssb) [Burkholderia multivorans strain FDAARGOS_722]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGDEGGYGGGYGGGGGGRGEQMERGGGGGRASGAARGGGGGG
QSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=402889 FOC30_RS25935 WP_043281541.1 2511740..2512285(+) (ssb) [Burkholderia multivorans strain FDAARGOS_722]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACCACCGACCGCTACAAGGACAAGGCGAGCGGCGAGTTCAAGGAAATGACCGAGTGGC
ATCGCGTCGCATTCTTCGGCCGTCTCGCCGAAATCGTTAGCGAATACCTGAAGAAGGGCTCGTCGGTCTACATCGAAGGC
CGGATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGCTCGGGCGGTGGCGGCGGCGGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGTGGCG
GCGGTCGCGGCGAGCAGATGGAGCGCGGCGGCGGTGGCGGTCGTGCAAGCGGCGCGGCGCGTGGCGGTGGCGGCGGTGGC
CAGAGCCGTCCGAGCGCGCCGGCTGGCGGCGGCTTCGACGAGATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.785

100

0.536
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.492
  ssb Neisseria gonorrhoeae MS11

44.134

98.895

0.436
  ssb Neisseria meningitidis MC58

43.575

98.895

0.431

Multiple sequence alignment