Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FOB92_RS01360 Genome accession   NZ_CP046335
Coordinates   269613..271601 (+) Length   662 a.a.
NCBI ID   WP_000749582.1    Uniprot ID   -
Organism   Streptococcus mitis strain FDAARGOS_684     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 264613..276601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB92_RS01330 (FOB92_01330) - 265003..265233 (+) 231 WP_000250399.1 DUF1146 family protein -
  FOB92_RS01335 (FOB92_01335) murA 265257..266540 (+) 1284 WP_000411901.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOB92_RS01340 (FOB92_01340) - 266533..266721 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  FOB92_RS01345 (FOB92_01345) endA 266760..267584 (+) 825 WP_023947085.1 DNA-entry nuclease EndA Machinery gene
  FOB92_RS01350 (FOB92_01350) - 267851..269182 (+) 1332 WP_000390033.1 hemolysin family protein -
  FOB92_RS01360 (FOB92_01360) amiA3 269613..271601 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  FOB92_RS01365 (FOB92_01365) amiC 271668..273164 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  FOB92_RS01370 (FOB92_01370) amiD 273164..274090 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  FOB92_RS01375 (FOB92_01375) amiE 274099..275166 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  FOB92_RS01380 (FOB92_01380) amiF 275177..276103 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72530.86 Da        Isoelectric Point: 4.9296

>NTDB_id=402787 FOB92_RS01360 WP_000749582.1 269613..271601(+) (amiA3) [Streptococcus mitis strain FDAARGOS_684]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKSVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=402787 FOB92_RS01360 WP_000749582.1 269613..271601(+) (amiA3) [Streptococcus mitis strain FDAARGOS_684]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTCTATCAAACAGATCCAGAAACTTTGGATTATATCGTCAGCA
ATATCGATTCAACATCATTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAACTTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACATATACCTATAAAATCCGTAAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAGGAATACGCTCCTGTAACTGCTAAAGACTTCGTTACTGGTTTGAAACACGCCGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGAGTAAAAGCACTTGATGATCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACCACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACCGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTAAAATCTGTAACTCCAAAATCATCTATCGAGATGGCTAAAAATGATGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTGATTGCCAAAGGTTT
TGCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTTAAAGATA
ACATTTACTTTAATGAACCAGGAGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAATCATACTGCC
AAAACAAGTGATGCTCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCTGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACATTCGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCAGATTCTCAAAATGGCCTTTACAATGAAGAAAAAGCGAAAGAAGTCTTTGCTAAAGCCAAATCAAGTCT
ACAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCCTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAGCAAGACTGGGATATCCATACCTTGCTAGGATGGAACCCGGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCCTTAAGGGAGGAAGCACTCGCCTTTACCTTGGTATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTGGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCTGTAGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAAAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.819

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.518

100

0.547
  amiA Streptococcus salivarius strain HSISS4

53.916

100

0.541

Multiple sequence alignment