Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FOB91_RS09780 Genome accession   NZ_CP046328
Coordinates   2029257..2029922 (+) Length   221 a.a.
NCBI ID   WP_012000103.1    Uniprot ID   A8AVW5
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2024257..2034922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS09755 (FOB91_09755) - 2024421..2025824 (+) 1404 WP_012000098.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FOB91_RS09760 (FOB91_09760) - 2025821..2026207 (+) 387 WP_012000099.1 S1 RNA-binding domain-containing protein -
  FOB91_RS09765 (FOB91_09765) cysK 2026244..2027173 (-) 930 WP_012000100.1 cysteine synthase A -
  FOB91_RS09770 (FOB91_09770) - 2027271..2027903 (-) 633 WP_041789573.1 YigZ family protein -
  FOB91_RS09775 (FOB91_09775) comFA/cflA 2027959..2029260 (+) 1302 WP_012000102.1 DEAD/DEAH box helicase Machinery gene
  FOB91_RS09780 (FOB91_09780) comFC/cflB 2029257..2029922 (+) 666 WP_012000103.1 ComF family protein Machinery gene
  FOB91_RS09785 (FOB91_09785) hpf 2030008..2030550 (+) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25895.01 Da        Isoelectric Point: 8.4502

>NTDB_id=402718 FOB91_RS09780 WP_012000103.1 2029257..2029922(+) (comFC/cflB) [Streptococcus gordonii strain FDAARGOS_683]
MKQCLICLAILEEQLNFMDLLLLKRKENDICQECLNSFEEIPEEHCPTCYKAGDKKLCKDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSLRKELKNFQSYTILSIPLSESKMRKRGFNQVSGLLEAAQIPYQEILKKKESQTQS
SKDRKERLENTGNFYMIENTKIPKKILLVDDIYTTGATLQDAKLTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=402718 FOB91_RS09780 WP_012000103.1 2029257..2029922(+) (comFC/cflB) [Streptococcus gordonii strain FDAARGOS_683]
ATGAAACAATGTCTAATCTGCTTAGCTATATTAGAAGAGCAGTTGAATTTTATGGATTTATTACTATTAAAAAGAAAAGA
AAATGACATTTGTCAAGAATGCTTAAATTCCTTCGAAGAAATTCCAGAAGAACATTGTCCAACCTGTTATAAAGCTGGGG
ACAAAAAATTGTGCAAAGATTGTCAGTACTGGCAGGAAAGAGGATTAGAAGTAGCGCATAAAAGTTTGTACACTTATAAT
AAAGCAATGAAAGACTATTTTAGTCGCTACAAATTTCAAGGAGATTATCTTTTAAGAAATGTATTTGCCTTAAGCCTAAG
AAAAGAGTTAAAAAATTTTCAAAGCTACACAATTTTAAGCATTCCTTTAAGTGAGAGTAAGATGAGAAAAAGAGGATTCA
ATCAAGTGTCAGGATTACTTGAAGCTGCACAAATACCTTATCAAGAGATATTAAAGAAAAAAGAAAGTCAAACACAGTCT
AGTAAAGACAGAAAAGAAAGATTAGAAAACACAGGGAATTTTTACATGATTGAAAATACGAAAATCCCGAAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGAGCAACCTTGCAAGATGCAAAATTGACATTATTTGAAAATGGAGCGAAAGAAA
TCATGACATTTTCATTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae Rx1

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae D39

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae R6

49.315

99.095

0.489
  comFC/cflB Streptococcus mitis SK321

48.858

99.095

0.484

Multiple sequence alignment