Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SALIVA_RS02155 Genome accession   NC_017595
Coordinates   418038..418997 (+) Length   319 a.a.
NCBI ID   WP_014633983.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 413038..423997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02145 (SALIVA_0430) - 413649..414389 (-) 741 WP_014633981.1 CPBP family intramembrane glutamic endopeptidase -
  SALIVA_RS02150 (SALIVA_0431) - 414800..416737 (+) 1938 WP_014633982.1 GbpC/Spa domain-containing protein -
  SALIVA_RS02155 (SALIVA_0432) coiA 418038..418997 (+) 960 WP_014633983.1 competence protein CoiA Machinery gene
  SALIVA_RS02160 (SALIVA_0433) pepF 419008..420813 (+) 1806 WP_014633984.1 oligoendopeptidase F Regulator
  SALIVA_RS02165 (SALIVA_0434) - 421025..422245 (+) 1221 WP_014633985.1 OFA family MFS transporter -
  SALIVA_RS02170 (SALIVA_0435) - 422317..423024 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37927.78 Da        Isoelectric Point: 9.4968

>NTDB_id=40263 SALIVA_RS02155 WP_014633983.1 418038..418997(+) (coiA) [Streptococcus salivarius JIM8777]
MLIARNQEGKLISALETSLQRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELIGKNPRW
MRRQEKAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=40263 SALIVA_RS02155 WP_014633983.1 418038..418997(+) (coiA) [Streptococcus salivarius JIM8777]
ATGTTAATTGCAAGAAATCAGGAGGGGAAGCTCATTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTTCTTCTGAGACATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAAGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATTGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAAAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Lactococcus lactis subsp. cremoris KW2

37.273

100

0.386

Multiple sequence alignment