Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SALIVA_RS01740 Genome accession   NC_017595
Coordinates   336318..336980 (+) Length   220 a.a.
NCBI ID   WP_041826648.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331318..341980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS01715 (SALIVA_0339) - 331621..332331 (+) 711 WP_014633927.1 ABC transporter ATP-binding protein -
  SALIVA_RS01720 (SALIVA_0340) - 332466..333125 (+) 660 WP_014633928.1 CBS and ACT domain-containing protein -
  SALIVA_RS01725 (SALIVA_0341) cysK 333309..334235 (-) 927 WP_002883742.1 cysteine synthase A -
  SALIVA_RS01730 (SALIVA_0342) - 334337..334963 (-) 627 WP_014633929.1 YigZ family protein -
  SALIVA_RS01735 (SALIVA_0343) comFA/cflA 335018..336337 (+) 1320 WP_014633930.1 DEAD/DEAH box helicase Machinery gene
  SALIVA_RS01740 (SALIVA_0344) comFC/cflB 336318..336980 (+) 663 WP_041826648.1 ComF family protein Machinery gene
  SALIVA_RS01745 (SALIVA_0345) hpf 337059..337607 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26162.54 Da        Isoelectric Point: 9.0293

>NTDB_id=40258 SALIVA_RS01740 WP_041826648.1 336318..336980(+) (comFC/cflB) [Streptococcus salivarius JIM8777]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCRNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKIFQKDIKNNLKPFFKKGYTIVPVPLSEKRLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=40258 SALIVA_RS01740 WP_041826648.1 336318..336980(+) (comFC/cflB) [Streptococcus salivarius JIM8777]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCGAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAAAAAGATATAAAAAA
TAATTTAAAACCATTTTTTAAAAAAGGTTATACTATAGTGCCAGTCCCATTATCAGAAAAACGCCTGGTAGAAAGAGGAT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCTACTTTATATCAGATGGTTCAACTATTAGAAGCTATTGGTATTAAAGAGGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment