Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOC54_RS04755 Genome accession   NZ_CP046306
Coordinates   904517..905035 (-) Length   172 a.a.
NCBI ID   WP_049418760.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_746     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 899517..910035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC54_RS04730 (FOC54_04730) - 900993..901622 (+) 630 WP_155975093.1 NDxxF motif lipoprotein -
  FOC54_RS04735 (FOC54_04735) - 901720..902298 (-) 579 WP_049335854.1 histidine phosphatase family protein -
  FOC54_RS04740 (FOC54_04740) - 902577..902825 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FOC54_RS04745 (FOC54_04745) - 903106..904050 (-) 945 WP_155975094.1 hypothetical protein -
  FOC54_RS04750 (FOC54_04750) rpsR 904233..904475 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  FOC54_RS04755 (FOC54_04755) ssbA 904517..905035 (-) 519 WP_049418760.1 single-stranded DNA-binding protein Machinery gene
  FOC54_RS04760 (FOC54_04760) rpsF 905057..905353 (-) 297 WP_002447961.1 30S ribosomal protein S6 -
  FOC54_RS04765 (FOC54_04765) - 905602..905793 (+) 192 WP_002447995.1 hypothetical protein -
  FOC54_RS04770 (FOC54_04770) ychF 905862..906959 (-) 1098 WP_155975095.1 redox-regulated ATPase YchF -
  FOC54_RS04775 (FOC54_04775) - 906971..907174 (-) 204 WP_002448008.1 DUF951 domain-containing protein -
  FOC54_RS04780 (FOC54_04780) - 907195..908073 (-) 879 WP_115345339.1 mechanosensitive ion channel family protein -
  FOC54_RS04785 (FOC54_04785) - 908204..909028 (-) 825 WP_155975096.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.44 Da        Isoelectric Point: 4.9265

>NTDB_id=402471 FOC54_RS04755 WP_049418760.1 904517..905035(-) (ssbA) [Staphylococcus hominis strain FDAARGOS_746]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNNNRASNNNQSDNPFANAN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=402471 FOC54_RS04755 WP_049418760.1 904517..905035(-) (ssbA) [Staphylococcus hominis strain FDAARGOS_746]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAAT
GGTCCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.773

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.564
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.628

0.372

Multiple sequence alignment