Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FOB21_RS08070 Genome accession   NZ_CP046296
Coordinates   1402487..1403209 (-) Length   240 a.a.
NCBI ID   WP_155861574.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS_552     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397487..1408209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB21_RS08050 (FOB21_08050) aroB 1398183..1399262 (-) 1080 WP_155861572.1 3-dehydroquinate synthase -
  FOB21_RS08055 (FOB21_08055) aroK 1399291..1399827 (-) 537 WP_005101380.1 shikimate kinase AroK -
  FOB21_RS17665 comQ 1399864..1400478 (-) 615 WP_410487243.1 hypothetical protein Machinery gene
  FOB21_RS08060 (FOB21_08060) - 1400533..1401942 (-) 1410 Protein_1366 AMIN domain-containing protein -
  FOB21_RS08065 (FOB21_08065) pilP 1401960..1402487 (-) 528 WP_155861573.1 pilus assembly protein PilP Machinery gene
  FOB21_RS08070 (FOB21_08070) comO 1402487..1403209 (-) 723 WP_155861574.1 type 4a pilus biogenesis protein PilO Machinery gene
  FOB21_RS08075 (FOB21_08075) comN 1403206..1403808 (-) 603 WP_155861575.1 PilN domain-containing protein Machinery gene
  FOB21_RS08080 (FOB21_08080) - 1403862..1404725 (-) 864 WP_004679438.1 IS982 family transposase -
  FOB21_RS08085 (FOB21_08085) - 1404837..1405894 (-) 1058 Protein_1371 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27120.70 Da        Isoelectric Point: 4.5995

>NTDB_id=402402 FOB21_RS08070 WP_155861574.1 1402487..1403209(-) (comO) [Acinetobacter lwoffii strain FDAARGOS_552]
MSNEEFDEFCQDVVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIAALAFAVIYFVMIRSTIESISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGAENKEKKSEIPVIDYVVKAKTYRYVGNAEGAAAQPAANSTTQGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=402402 FOB21_RS08070 WP_155861574.1 1402487..1403209(-) (comO) [Acinetobacter lwoffii strain FDAARGOS_552]
ATGAGTAATGAAGAATTCGATGAGTTCTGCCAAGATGTCGTCGCTGTACCCAAAAATAAAATGACTGTTGAAAAGTTTTT
TCAGCAATTCAATACATTAGATCCAAATAACTATGGTAGCTGGCCTTTGTCGGTCAAAATTACCTGCTGGATTTTTATTG
CGGCACTGGCATTTGCGGTGATTTACTTTGTCATGATCAGAAGCACGATTGAGTCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGCTGAATGAATTTCGCGAAAAAGAATCCAAATTACGCAATTTACAACAATATCAAATCCAGCTTCAGGAAAT
GGAAGCCCGTTTTAACCAGCAGTTAGAACAGTTGCCGAAAGAAACTGAAATTCCGGGTCTGGTTGAAGATATTAACCTGA
GCGGTGTGAATTCAGGCCTGAAGTTTAAAAATATCCGTCTAGAGCCTGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTGCGATTGAAGCTACTGGGGATTATCACGCTTTTGGTTCCTTTGTGAGCAGTATTGCCGGCTTGTCACGTATTGTTAC
GCTGCATGATTTCACCATTACCGGTGCTGAAAACAAAGAGAAAAAATCTGAAATTCCGGTCATTGATTATGTGGTGAAAG
CCAAAACTTATCGTTATGTCGGTAATGCGGAAGGTGCTGCAGCGCAGCCTGCAGCTAACAGCACTACTCAGGGGGCGCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.769

100

0.683
  pilO Acinetobacter baumannii D1279779

66.946

99.583

0.667

Multiple sequence alignment