Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HUZ63_RS09025 Genome accession   NZ_CP054965
Coordinates   1918838..1920265 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain STIN_95     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1913838..1925265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ63_RS08990 (HUZ63_08895) hisL 1914422..1914472 (-) 51 WP_001364200.1 his operon leader peptide -
  HUZ63_RS08995 (HUZ63_08900) yefM 1914755..1915006 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HUZ63_RS09000 (HUZ63_08905) yoeB 1915003..1915257 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HUZ63_RS09005 (HUZ63_08910) yeeZ 1915340..1916164 (+) 825 WP_000754741.1 SDR family oxidoreductase -
  HUZ63_RS09010 (HUZ63_08915) yeeY 1916210..1917139 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HUZ63_RS09015 (HUZ63_08920) yoeI 1917354..1917416 (+) 63 WP_010723108.1 membrane protein YoeI -
  HUZ63_RS09020 (HUZ63_08925) plaP 1917406..1918764 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HUZ63_RS09025 (HUZ63_08930) sbcB 1918838..1920265 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  HUZ63_RS09030 (HUZ63_08935) dacD 1920474..1921640 (+) 1167 WP_001519880.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HUZ63_RS09035 (HUZ63_08940) sbmC 1921759..1922232 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HUZ63_RS09040 (HUZ63_08945) yeeA 1922430..1923488 (+) 1059 WP_001200890.1 FUSC family protein -
  HUZ63_RS09045 (HUZ63_08950) tmaR 1923660..1923989 (+) 330 WP_000450409.1 DUF496 family protein -
  HUZ63_RS25045 (HUZ63_08955) - 1924090..1924272 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HUZ63_RS09055 - 1924392..1924472 (+) 81 WP_023441679.1 hypothetical protein -
  HUZ63_RS09060 (HUZ63_08965) - 1924761..1924841 (-) 81 Protein_1779 hypothetical protein -
  HUZ63_RS09065 (HUZ63_08970) yeeW 1924887..1925081 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=402402 HUZ63_RS09025 WP_000980557.1 1918838..1920265(-) (sbcB) [Escherichia coli strain STIN_95]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=402402 HUZ63_RS09025 WP_000980557.1 1918838..1920265(-) (sbcB) [Escherichia coli strain STIN_95]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment