Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FOB21_RS08075 Genome accession   NZ_CP046296
Coordinates   1403206..1403808 (-) Length   200 a.a.
NCBI ID   WP_155861575.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS_552     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398206..1408808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB21_RS08055 (FOB21_08055) aroK 1399291..1399827 (-) 537 WP_005101380.1 shikimate kinase AroK -
  FOB21_RS17665 comQ 1399864..1400478 (-) 615 WP_410487243.1 hypothetical protein Machinery gene
  FOB21_RS08060 (FOB21_08060) - 1400533..1401942 (-) 1410 Protein_1366 AMIN domain-containing protein -
  FOB21_RS08065 (FOB21_08065) pilP 1401960..1402487 (-) 528 WP_155861573.1 pilus assembly protein PilP Machinery gene
  FOB21_RS08070 (FOB21_08070) comO 1402487..1403209 (-) 723 WP_155861574.1 type 4a pilus biogenesis protein PilO Machinery gene
  FOB21_RS08075 (FOB21_08075) comN 1403206..1403808 (-) 603 WP_155861575.1 PilN domain-containing protein Machinery gene
  FOB21_RS08080 (FOB21_08080) - 1403862..1404725 (-) 864 WP_004679438.1 IS982 family transposase -
  FOB21_RS08085 (FOB21_08085) - 1404837..1405894 (-) 1058 Protein_1371 pilus assembly protein PilM -
  FOB21_RS08090 (FOB21_08090) ponA 1406060..1408585 (+) 2526 WP_155861576.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22354.26 Da        Isoelectric Point: 4.7506

>NTDB_id=402403 FOB21_RS08075 WP_155861575.1 1403206..1403808(-) (comN) [Acinetobacter lwoffii strain FDAARGOS_552]
MKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNAIVERMKLIQGLQTQ
RPIAVHLIDEIVRVTPSNMYITKFQRIGDKFTIEGRAESSNTVAELLRNLEASSWYRNAFMNAFLVAEEAKEKAPSSIIP
RVEESYGSFTVTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=402403 FOB21_RS08075 WP_155861575.1 1403206..1403808(-) (comN) [Acinetobacter lwoffii strain FDAARGOS_552]
ATTAAAAGAAATAATGAATTCGTGGCAATCTGCGTGGGGGCGCTGTTCTTAGGATTAGCAGCAGCAGGTTCTACCTGGTT
TTATTATGATCACAAGCTTCAGGATCAGGAACAGGCCAATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGT
TAAAGGCGCTTGAAGGTTTACAAGAACAGCGTAATGCAATTGTTGAACGGATGAAACTGATTCAGGGCCTACAAACCCAA
CGTCCGATTGCAGTGCATCTGATTGATGAAATTGTGCGGGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTAT
CGGTGATAAGTTTACCATTGAAGGTCGAGCTGAGAGTTCAAATACGGTAGCAGAACTGCTCCGTAATCTGGAAGCTTCAT
CTTGGTATCGGAATGCCTTTATGAATGCCTTCCTGGTGGCTGAAGAAGCAAAAGAAAAGGCACCGAGCTCGATTATTCCA
CGTGTGGAAGAATCTTATGGCAGTTTTACTGTAACTGTAACTGTGGATCTGGATCAGATCGCTCAGCCAGTACTTAACGA
AGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(86-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

65.306

98

0.64
  pilN Acinetobacter baumannii D1279779

68.889

90

0.62

Multiple sequence alignment