Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HUZ63_RS09085 Genome accession   NZ_CP054965
Coordinates   1926273..1926749 (-) Length   158 a.a.
NCBI ID   WP_001351157.1    Uniprot ID   -
Organism   Escherichia coli strain STIN_95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1921273..1931749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ63_RS09035 (HUZ63_08940) sbmC 1921759..1922232 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HUZ63_RS09040 (HUZ63_08945) yeeA 1922430..1923488 (+) 1059 WP_001200890.1 FUSC family protein -
  HUZ63_RS09045 (HUZ63_08950) tmaR 1923660..1923989 (+) 330 WP_000450409.1 DUF496 family protein -
  HUZ63_RS25045 (HUZ63_08955) - 1924090..1924272 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HUZ63_RS09055 - 1924392..1924472 (+) 81 WP_023441679.1 hypothetical protein -
  HUZ63_RS09060 (HUZ63_08965) - 1924761..1924841 (-) 81 Protein_1779 hypothetical protein -
  HUZ63_RS09065 (HUZ63_08970) yeeW 1924887..1925081 (-) 195 WP_000988601.1 DUF5983 family protein -
  HUZ63_RS09070 (HUZ63_08975) cbtA 1925078..1925452 (-) 375 WP_071448168.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  HUZ63_RS09075 (HUZ63_08980) cbeA 1925541..1925909 (-) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  HUZ63_RS09080 (HUZ63_08985) yeeT 1925983..1926204 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  HUZ63_RS09085 (HUZ63_08990) radC 1926273..1926749 (-) 477 WP_001351157.1 RadC family protein Machinery gene
  HUZ63_RS09090 (HUZ63_08995) - 1926765..1927250 (-) 486 WP_239634743.1 antirestriction protein -
  HUZ63_RS09095 (HUZ63_09000) - 1927341..1928162 (-) 822 WP_001234569.1 DUF932 domain-containing protein -
  HUZ63_RS09100 (HUZ63_09005) - 1928383..1928793 (-) 411 WP_000846704.1 hypothetical protein -
  HUZ63_RS09105 (HUZ63_09010) - 1928809..1929486 (-) 678 WP_001362823.1 hypothetical protein -
  HUZ63_RS09110 (HUZ63_09015) - 1929622..1930692 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  HUZ63_RS09115 (HUZ63_09020) - 1930689..1931594 (-) 906 WP_000203550.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17593.25 Da        Isoelectric Point: 6.9180

>NTDB_id=402403 HUZ63_RS09085 WP_001351157.1 1926273..1926749(-) (radC) [Escherichia coli strain STIN_95]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=402403 HUZ63_RS09085 WP_001351157.1 1926273..1926749(-) (radC) [Escherichia coli strain STIN_95]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment