Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUT14_RS24960 Genome accession   NZ_CP054939
Coordinates   5506800..5508416 (+) Length   538 a.a.
NCBI ID   WP_176118409.1    Uniprot ID   -
Organism   Streptomyces sp. NA02536     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5501800..5513416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT14_RS24925 (HUT14_24935) lepB 5501833..5502564 (+) 732 WP_176118406.1 signal peptidase I -
  HUT14_RS24930 (HUT14_24940) lepB 5502557..5503732 (+) 1176 WP_368661651.1 signal peptidase I -
  HUT14_RS24935 (HUT14_24945) lepB 5503791..5504519 (+) 729 WP_160160320.1 signal peptidase I -
  HUT14_RS24940 (HUT14_24950) lepB 5504594..5505370 (+) 777 WP_176118407.1 signal peptidase I -
  HUT14_RS24945 (HUT14_24955) - 5505360..5505887 (+) 528 WP_040906058.1 NUDIX hydrolase -
  HUT14_RS24950 (HUT14_24960) - 5505941..5506249 (+) 309 WP_004924843.1 DUF2469 domain-containing protein -
  HUT14_RS24955 (HUT14_24965) - 5506397..5506798 (+) 402 WP_084828120.1 YraN family protein -
  HUT14_RS24960 (HUT14_24970) comM 5506800..5508416 (+) 1617 WP_176118409.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUT14_RS24965 (HUT14_24975) dprA 5508413..5509573 (+) 1161 WP_176118410.1 DNA-processing protein DprA -
  HUT14_RS24970 (HUT14_24980) whiG 5509855..5510697 (+) 843 WP_176118412.1 RNA polymerase sigma factor WhiG -
  HUT14_RS24975 (HUT14_24985) - 5510810..5511367 (+) 558 WP_121548059.1 TetR/AcrR family transcriptional regulator -
  HUT14_RS24980 (HUT14_24990) - 5511468..5512019 (-) 552 WP_254895870.1 murein hydrolase activator EnvC -
  HUT14_RS24985 (HUT14_24995) rpsB 5512351..5513289 (+) 939 WP_121548061.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 56032.13 Da        Isoelectric Point: 6.7691

>NTDB_id=402271 HUT14_RS24960 WP_176118409.1 5506800..5508416(+) (comM) [Streptomyces sp. NA02536]
MGFARTCAVTLVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDIAVACAVLGAAERIDPRVLADLVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECSAAEASLVPGVSVLGIRS
LRQLIAVLTDEPVPEETEEPPGPEPLLAGLRAPGTGADIGIHAGGAHDHGHDLADVVGQRSARTAVEVAAAGGHHLFLEG
PPGAGKTMLAERLPSILPPLDRQASLEVTAVHSVAGLLPPGKPLIDTAPYCAPHHSATMQALVGGGPGTARPGAVSLSHR
GVLFLDETPEFSSRALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQTNDRCDCPPSAIRRYQARLSG
PLLDRVDLRVEVDRVTRTELTAAGVRGETTATVADRVRAARDRAATRLTGTPWRSNSEIPGRELRSRWRAAPGAMDDAER
SLERGVLTARGLDRVLRVAWTVADLAGHDRPDATDVALALQLRTGVPRGVPMAIGAAV

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=402271 HUT14_RS24960 WP_176118409.1 5506800..5508416(+) (comM) [Streptomyces sp. NA02536]
ATGGGATTCGCCCGTACGTGCGCGGTCACGCTGGTGGGCGTCGAGGGCGTCGTCGTGGAGGTCCAGGCCGACCTGGAGCC
CGGGGTGGCGGCCTTCACGCTGGTGGGACTGCCGGACAAGAGCCTGACGGAGAGCCGGGACCGGGTCAGGGCCGCGGTGG
TCAACTCCGGCGGCGAGTGGCCGCAGAAGAAGCTCACCGTGGGACTCAGCCCGGCGTCGGTGCCGAAGGCGGGCAGCGGG
TTCGACATCGCGGTCGCCTGCGCGGTGCTCGGCGCCGCCGAGCGCATCGATCCGCGGGTGCTCGCCGACCTCGTCATGAT
CGGCGAACTGGGGCTGGACGGCAGGGTGCGGCCGGTGCGCGGCATCCTCCCGGCGGTACTGGCCGCGGCGGACGCGGGAT
ACGAGCAGGTGGTGGTGCCGGAGTGCTCCGCCGCCGAGGCCTCACTGGTACCGGGCGTGTCCGTGCTGGGCATCCGCAGC
CTGCGCCAGCTGATCGCCGTGCTCACCGACGAGCCCGTGCCCGAGGAGACCGAGGAGCCCCCGGGCCCCGAGCCGCTGCT
GGCCGGACTGCGCGCCCCCGGCACCGGGGCGGACATCGGTATCCACGCCGGAGGGGCGCACGACCACGGCCACGACCTCG
CGGACGTCGTGGGCCAGCGGTCGGCGCGGACGGCGGTGGAGGTGGCCGCGGCGGGCGGACACCATCTCTTTCTCGAAGGC
CCGCCCGGCGCCGGCAAGACCATGCTCGCGGAGCGCCTGCCGTCGATCCTGCCGCCGCTGGACCGGCAGGCCTCGCTCGA
GGTGACGGCCGTGCACTCGGTGGCCGGACTGCTGCCCCCGGGCAAGCCCCTGATCGACACGGCCCCCTACTGCGCCCCGC
ACCACTCGGCCACCATGCAGGCACTCGTCGGCGGCGGCCCCGGTACGGCCCGGCCGGGAGCGGTCTCCCTCTCGCACCGC
GGCGTGCTTTTTCTGGACGAGACCCCGGAGTTCAGCAGCCGGGCCCTGGACGCGCTGCGCCAGCCGCTGGAGGCCGGGCA
CGTGGTCATCGCGCGCAGCGCGGGCGTGGTGCGCTTCCCGGCGCGTTTCCTGATGGTGCTCGCCGCCAACCCGTGCCCCT
GCGGACGCTTCTCGCAGACGAACGACCGGTGCGACTGCCCGCCCTCCGCGATCCGCCGCTACCAGGCCAGGCTGTCCGGG
CCCCTGCTCGACCGGGTCGACCTGCGGGTCGAGGTGGACCGCGTCACGCGCACCGAACTGACGGCGGCCGGCGTCCGGGG
CGAGACCACCGCCACCGTCGCCGACCGTGTGCGGGCGGCCCGGGACCGCGCGGCGACGCGGCTCACCGGCACCCCGTGGC
GCAGCAACAGCGAGATCCCCGGACGGGAGCTGCGCAGCCGCTGGCGCGCCGCCCCCGGCGCCATGGACGACGCCGAGCGG
AGCCTGGAGCGGGGTGTGCTCACCGCGCGGGGCCTCGACCGGGTGCTGCGGGTCGCCTGGACCGTCGCCGACCTGGCAGG
CCACGACCGGCCCGACGCCACCGACGTCGCCCTCGCCCTGCAACTGCGCACCGGCGTACCGCGCGGCGTGCCCATGGCCA
TCGGGGCGGCGGTATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(212-419)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.771

97.212

0.387
  comM Acinetobacter baylyi ADP1

39.802

93.866

0.374
  comM Vibrio cholerae strain A1552

38.241

97.212

0.372
  comM Vibrio cholerae O1 biovar El Tor strain E7946

38.241

97.212

0.372
  comM Haemophilus influenzae Rd KW20

37.051

98.327

0.364
  comM Legionella pneumophila str. Paris

36.535

98.699

0.361
  comM Legionella pneumophila strain ERS1305867

36.535

98.699

0.361