Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Vspart_RS14480 Genome accession   NZ_CP046268
Coordinates   3304540..3305187 (-) Length   215 a.a.
NCBI ID   WP_074371510.1    Uniprot ID   -
Organism   Vibrio spartinae strain 3.6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299540..3310187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS14470 (Vspart_02989) uvrA 3300574..3303396 (-) 2823 WP_074371508.1 excinuclease ABC subunit UvrA -
  Vspart_RS14475 (Vspart_02990) galU 3303535..3304422 (-) 888 WP_182287782.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Vspart_RS14480 (Vspart_02991) qstR 3304540..3305187 (-) 648 WP_074371510.1 LuxR C-terminal-related transcriptional regulator Regulator
  Vspart_RS14485 (Vspart_02992) ssb 3305460..3305999 (+) 540 WP_074371511.1 single-stranded DNA-binding protein Machinery gene
  Vspart_RS14490 (Vspart_02993) metH 3306097..3309771 (-) 3675 WP_182287783.1 methionine synthase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25238.31 Da        Isoelectric Point: 9.6063

>NTDB_id=402169 Vspart_RS14480 WP_074371510.1 3304540..3305187(-) (qstR) [Vibrio spartinae strain 3.6]
MKRSNYSRVLYVLYPDNQEPSMFYHEIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQQKEVLLSRLNMENALDLCLE
TVVVNVEKRLRTEELLQLGNLKGLFYRSDPLELIIAALREIREGQIYLPRHICSQLLHYYRHLFNNKNVSAAISLTSREL
EILRCLKTGASNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=402169 Vspart_RS14480 WP_074371510.1 3304540..3305187(-) (qstR) [Vibrio spartinae strain 3.6]
ATGAAAAGATCAAATTACAGCAGAGTGCTTTATGTCCTCTACCCCGATAATCAAGAACCTTCAATGTTCTATCATGAAAT
CGAGGTCGCACTAGGACAGATACTTCCCAAAATTCAACCGCGGCAATTCATGCTGTCCCATCAGACAGATCGGCACAAAA
TACTCCTGTTTGATTATCAACAGAAAGAAGTATTGCTATCCCGTTTGAATATGGAGAACGCACTGGATTTATGTCTAGAA
ACCGTGGTTGTCAATGTTGAGAAACGCCTGAGAACAGAAGAACTTCTCCAGCTAGGTAATTTGAAAGGGCTGTTTTATCG
CAGTGATCCGCTTGAACTGATTATCGCTGCGCTGCGCGAAATCAGAGAAGGGCAAATTTATTTACCGCGACATATTTGTA
GCCAGCTGCTCCATTACTATCGACATCTATTTAATAATAAAAACGTCAGTGCAGCGATATCTCTGACCTCCAGAGAGTTG
GAAATCCTGCGCTGTCTGAAAACGGGGGCATCGAATACACAAATTGCAGATAATCTGTTTATCAGCGAATTCACGGTCAA
GTCACATCTGTATCAGATCTTTAAAAAAATCTCGGTGAAAAACCGCACTCAAGCCACAACATGGGCAAAACAAAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.691

100

0.512
  qstR Vibrio campbellii strain DS40M4

48.148

100

0.484
  qstR Vibrio parahaemolyticus RIMD 2210633

46.512

100

0.465

Multiple sequence alignment