Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Vspart_RS14485 Genome accession   NZ_CP046268
Coordinates   3305460..3305999 (+) Length   179 a.a.
NCBI ID   WP_074371511.1    Uniprot ID   A0A1N6M0F6
Organism   Vibrio spartinae strain 3.6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3300460..3310999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS14470 (Vspart_02989) uvrA 3300574..3303396 (-) 2823 WP_074371508.1 excinuclease ABC subunit UvrA -
  Vspart_RS14475 (Vspart_02990) galU 3303535..3304422 (-) 888 WP_182287782.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Vspart_RS14480 (Vspart_02991) qstR 3304540..3305187 (-) 648 WP_074371510.1 LuxR C-terminal-related transcriptional regulator Regulator
  Vspart_RS14485 (Vspart_02992) ssb 3305460..3305999 (+) 540 WP_074371511.1 single-stranded DNA-binding protein Machinery gene
  Vspart_RS14490 (Vspart_02993) metH 3306097..3309771 (-) 3675 WP_182287783.1 methionine synthase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19769.77 Da        Isoelectric Point: 4.9371

>NTDB_id=402170 Vspart_RS14485 WP_074371511.1 3305460..3305999(+) (ssb) [Vibrio spartinae strain 3.6]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGSGGQAQSQPGMQSQQQNSGWGQPQQPQSQAAPAQQQPQQQS
TPQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=402170 Vspart_RS14485 WP_074371511.1 3305460..3305999(+) (ssb) [Vibrio spartinae strain 3.6]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTTGGAAGTGATCCTGAAGTTCGTTACATGCCAAGTGG
CGGTGCAGTTGCGAATATCACGATTGCGACGTCGGAAACATGGCGCGATAAAACAACGGGTGAGCAAAGAGAAAAAACCG
AATGGCACCGTGTCGCCCTGTTCGGAAAATTGGCAGAAGTCGCAGGAGAATACCTACGCAAAGGTTCTCAGGTATATATT
GAAGGGCAGCTGCAAACGCGGAAATGGCAAGATCAAAGCGGTCAGGAACGTTATACGACAGAAGTTGTTGTTCAAGGATT
TAACGGTGTAATGCAAATGCTAGGTGGTCGTCAGGGTTCTGGTGGCCAAGCTCAGTCTCAGCCCGGGATGCAGTCTCAAC
AGCAAAACAGTGGATGGGGACAGCCTCAGCAGCCTCAATCACAAGCGGCTCCAGCTCAACAGCAACCCCAGCAACAATCG
ACACCACAACCACAATACAATGAGCCACCAATGGATTTTGATGACGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M0F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.888

100

0.799
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.575
  ssb Neisseria gonorrhoeae MS11

47.253

100

0.48
  ssb Neisseria meningitidis MC58

45.161

100

0.469

Multiple sequence alignment