Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   Vspart_RS07180 Genome accession   NZ_CP046268
Coordinates   1655459..1656064 (+) Length   201 a.a.
NCBI ID   WP_074373563.1    Uniprot ID   A0A1N6M6J5
Organism   Vibrio spartinae strain 3.6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650459..1661064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS07160 (Vspart_01479) - 1650800..1651066 (-) 267 WP_074373560.1 GrxA family glutaredoxin -
  Vspart_RS07165 (Vspart_01480) - 1651245..1652099 (-) 855 WP_074373561.1 MurR/RpiR family transcriptional regulator -
  Vspart_RS07170 (Vspart_01481) panP 1652426..1654078 (-) 1653 WP_074373562.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  Vspart_RS07175 (Vspart_01482) - 1654220..1655140 (-) 921 WP_074373644.1 HDOD domain-containing protein -
  Vspart_RS07180 (Vspart_01483) tfoX 1655459..1656064 (+) 606 WP_074373563.1 TfoX/Sxy family DNA transformation protein Regulator
  Vspart_RS07185 (Vspart_01484) - 1656130..1656678 (-) 549 WP_074373564.1 hypothetical protein -
  Vspart_RS07190 (Vspart_01485) - 1656947..1657447 (-) 501 WP_074373565.1 response regulator -
  Vspart_RS07195 (Vspart_01486) - 1657472..1659424 (-) 1953 WP_182288501.1 ATP-binding protein -
  Vspart_RS07200 (Vspart_01487) - 1659692..1660945 (+) 1254 WP_182288502.1 DUF945 family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23409.45 Da        Isoelectric Point: 9.4585

>NTDB_id=402160 Vspart_RS07180 WP_074373563.1 1655459..1656064(+) (tfoX) [Vibrio spartinae strain 3.6]
MIATKFFDYLIERENFDTKSIFGDIGLFWQDAMFALISTNHIYIRGGDILDEKLNALNCSKYVFVKKQSISKVNYYDITE
LFQSGYPCLGELISRSKALAIFQKKQKYSLSNRRLRDLPNLHLTIERMMKKSGIPDVATFFKLGALKAFIKVRQLYGTTT
DIKLLWKFVGAIEEIHWKLIPEKRKQQLLNECCTLMEIEEG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=402160 Vspart_RS07180 WP_074373563.1 1655459..1656064(+) (tfoX) [Vibrio spartinae strain 3.6]
ATGATAGCAACAAAATTTTTTGATTACTTAATAGAGAGAGAAAACTTTGACACGAAGTCAATATTTGGGGATATCGGGCT
GTTTTGGCAAGATGCCATGTTTGCTTTAATCAGCACCAATCATATTTATATTCGAGGTGGAGACATTCTGGATGAAAAAT
TAAATGCCTTAAATTGCTCAAAATATGTCTTTGTTAAAAAACAAAGTATTTCTAAAGTGAATTATTATGATATTACTGAA
TTATTTCAATCCGGTTATCCTTGTTTGGGAGAGTTGATCAGCCGCTCAAAAGCATTGGCTATTTTTCAAAAAAAGCAAAA
GTACTCATTATCGAACCGACGTTTGAGAGATTTGCCCAATTTGCACTTGACTATCGAGCGAATGATGAAGAAATCGGGGA
TTCCGGATGTTGCCACATTTTTTAAACTGGGGGCTTTGAAAGCTTTTATCAAAGTCAGGCAACTGTATGGTACAACGACG
GACATTAAACTGTTATGGAAATTCGTGGGAGCCATTGAAGAAATTCACTGGAAACTGATCCCGGAAAAACGCAAACAGCA
GCTATTGAATGAATGCTGCACTCTGATGGAAATAGAGGAGGGATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-191)

TfoX N-terminal domain (TfoX_N)

(12-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M6J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

54.167

95.522

0.517
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

53.646

95.522

0.512
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

53.646

95.522

0.512
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

53.646

95.522

0.512
  tfoX Vibrio cholerae strain A1552

53.646

95.522

0.512
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

53.646

95.522

0.512
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.083

95.522

0.498
  tfoX Aliivibrio fischeri ES114

42.408

95.025

0.403

Multiple sequence alignment