Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SOR_RS08125 Genome accession   NC_015291
Coordinates   1630092..1632059 (-) Length   655 a.a.
NCBI ID   WP_000837391.1    Uniprot ID   F2QF95
Organism   Streptococcus oralis Uo5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625092..1637059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS08110 (SOR_1660) cps4B 1625613..1626344 (-) 732 WP_000565330.1 capsular polysaccharide biosynthesis protein Cps4B -
  SOR_RS08115 (SOR_1661) - 1626346..1627791 (-) 1446 WP_000091220.1 LCP family protein -
  SOR_RS08120 (SOR_1662) amiA3 1627983..1629944 (-) 1962 WP_000594272.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS08125 (SOR_1663) amiA 1630092..1632059 (-) 1968 WP_000837391.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS08130 (SOR_1664) - 1632229..1633839 (-) 1611 WP_001156774.1 glycoside hydrolase family 13 protein -
  SOR_RS08135 (SOR_1665) - 1633993..1635477 (+) 1485 WP_000743590.1 DUF1846 domain-containing protein -
  SOR_RS08140 (SOR_1666) - 1635572..1636054 (+) 483 WP_000032556.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72423.92 Da        Isoelectric Point: 5.0129

>NTDB_id=40214 SOR_RS08125 WP_000837391.1 1630092..1632059(-) (amiA) [Streptococcus oralis Uo5]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=40214 SOR_RS08125 WP_000837391.1 1630092..1632059(-) (amiA) [Streptococcus oralis Uo5]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAGGCCAAAGACTTTGTTACTGGGCTTAAACATGCCGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTCAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAGAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTTCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ACAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTTAAGATTGACAATATTAAACTAACCTTCTACGATGGATCAGATCAAGAATCCTTGATTCGCAGCTTTACACA
AGGTGCCTATACAACAGCCCGACTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTATAGTCCACAAGAAGCGACAAGCTACTACCTTACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCCAAAACA
GACGAGGCTCAAAAAACTTCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCTCATGACTACG
TTCAAGTAGGCGAAAAGACCTTTGGAGAGTTGGCGCAGGCAGAGCTTGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCTGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCCGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCAATCGAATCATCACTTGGTACAGAGAATGTCATTGTCGATGTCCTTCAAATGACAGATAATGAAAAAATA
AGCATTACGTCCCAAGCTAAGGTTCCAGCACAAAAAGATTACGACTTGAATGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCACTCGTGGAAAAGATC
CAGAAGTGATGGCTCAAGTCGGTCTAGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTTAAT
AAGCGTTATGAAAAATACGCCAAAGCTCAAGCTTGGGTGTCAGACAGCTCGCTCTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCATTCACAAAAGCTTACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAGTACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2QF95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.623

100

0.559
  amiA3 Streptococcus thermophilus LMD-9

54.325

100

0.547
  amiA3 Streptococcus thermophilus LMG 18311

53.869

100

0.542

Multiple sequence alignment