Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SOR_RS08120 Genome accession   NC_015291
Coordinates   1627983..1629944 (-) Length   653 a.a.
NCBI ID   WP_000594272.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622983..1634944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS08095 (SOR_1657) - 1623528..1624121 (-) 594 WP_232501621.1 sugar transferase -
  SOR_RS08100 (SOR_1658) - 1624219..1624902 (-) 684 WP_001142498.1 tyrosine-protein kinase -
  SOR_RS08105 (SOR_1659) cpsC 1624912..1625604 (-) 693 WP_000664128.1 capsular polysaccharide biosynthesis protein CpsC -
  SOR_RS08110 (SOR_1660) cps4B 1625613..1626344 (-) 732 WP_000565330.1 capsular polysaccharide biosynthesis protein Cps4B -
  SOR_RS08115 (SOR_1661) - 1626346..1627791 (-) 1446 WP_000091220.1 LCP family protein -
  SOR_RS08120 (SOR_1662) amiA3 1627983..1629944 (-) 1962 WP_000594272.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS08125 (SOR_1663) amiA 1630092..1632059 (-) 1968 WP_000837391.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS08130 (SOR_1664) - 1632229..1633839 (-) 1611 WP_001156774.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73188.40 Da        Isoelectric Point: 4.7310

>NTDB_id=40213 SOR_RS08120 WP_000594272.1 1627983..1629944(-) (amiA3) [Streptococcus oralis Uo5]
MIKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKAQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDDYFNKEKAQAKFEEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=40213 SOR_RS08120 WP_000594272.1 1627983..1629944(-) (amiA3) [Streptococcus oralis Uo5]
ATGATCAAAATGAAAAAAAGACTAATCGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCGGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTTCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGCTAGAAAATGACAGCTACGGGAACCTCGTGCCTGCTCTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACAGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCAGCTGACAACAAGGCGCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTTGGTGTCAAA
GCCTTGGATGATTACACGGTCGAGTACACTTTGACTCGACCAGAACCGTACTGGAATTCAAAGACAACTAATAGTATCCT
TTTCCCAGTTAATGAAGAGTTCTTGAAATCAAAGGATAAAGACTTTGGTACCTTGACACCAGACAGCATCCTTTATAACG
GCCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCCTACTTTGATGGGTCAGATCAGGAGATGACTATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCAAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GCTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAACAACGGAC
GAACAAAAGAAATCAGCTCAAACAGCTATTTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
TTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTGGTTCCCCCAACATTTGTTCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCCTCTAAGCTTGTGAACTATGGAACTGAGTGGTCAGGTATCAATTTGGCA
GACGCTCAAGATGATTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGAGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGACGTTCCTGTTGATCAGACAAATAAAAACGCAGTTTCTGGTATGAACTCAGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACTGGCTTCTATCTCAAAATTTTTGGCCTTGATGCCAAGGAAGACCAAGAAC
TTATCAAGAGTCTGGGACTTGATACCTATACACAACTCCTAAAAGAAGCAGATGCTGAGAATAAAGATGTCGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGGACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTAGGAATCAAGGGCGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGAAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.446

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

51.294

100

0.516
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.508

Multiple sequence alignment