Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HUT19_RS07495 Genome accession   NZ_CP054916
Coordinates   1834498..1835586 (-) Length   362 a.a.
NCBI ID   WP_176179707.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829498..1840586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS07475 (HUT19_07475) - 1830131..1830739 (-) 609 WP_176179703.1 adenine phosphoribosyltransferase -
  HUT19_RS07480 (HUT19_07480) secF 1830736..1831869 (-) 1134 WP_176179704.1 protein translocase subunit SecF -
  HUT19_RS07485 (HUT19_07485) secD 1831871..1833643 (-) 1773 WP_176179705.1 protein translocase subunit SecD -
  HUT19_RS07490 (HUT19_07490) yajC 1833790..1834293 (-) 504 WP_176179706.1 preprotein translocase subunit YajC -
  HUT19_RS07495 (HUT19_07495) ruvB 1834498..1835586 (-) 1089 WP_176179707.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HUT19_RS07500 (HUT19_07500) ruvA 1835654..1836274 (-) 621 WP_176179708.1 Holliday junction branch migration protein RuvA -
  HUT19_RS07505 (HUT19_07505) ruvC 1836271..1836804 (-) 534 WP_176186589.1 crossover junction endodeoxyribonuclease RuvC -
  HUT19_RS07510 (HUT19_07510) - 1836934..1837686 (-) 753 WP_176179709.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HUT19_RS07515 (HUT19_07515) pdxT 1837744..1838328 (-) 585 WP_176186591.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  HUT19_RS07520 (HUT19_07520) pdxS 1838495..1839415 (-) 921 WP_176179710.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  HUT19_RS07525 (HUT19_07525) - 1839688..1840230 (-) 543 WP_176179711.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38175.59 Da        Isoelectric Point: 4.8745

>NTDB_id=401996 HUT19_RS07495 WP_176179707.1 1834498..1835586(-) (ruvB) [Streptomyces sp. NA02950]
MNWDETAPATAEDLSPGAGGRLVGADADGEDQAVEAALRPKDLGDFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG
LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLEVTIEPVGATEIAGRSRGTPRIANR
LLRRVRDYAQVKADGVITREIAASALAVYDVDGRGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVGTPAAWAHLGLTPPQQAGAGGQTGLFEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=401996 HUT19_RS07495 WP_176179707.1 1834498..1835586(-) (ruvB) [Streptomyces sp. NA02950]
GTGAACTGGGACGAAACCGCACCGGCCACCGCCGAGGACCTTTCCCCCGGCGCGGGCGGAAGGCTGGTGGGCGCCGACGC
CGACGGTGAGGACCAGGCGGTGGAGGCCGCGCTGCGCCCCAAGGACCTCGGTGACTTCGTCGGCCAGGAGCGGGTGCGCG
AGCAGCTGGACCTGGTGCTCAAGGCGGCCCGGCAGCGCGGCGGCACCGCCGACCACGTACTGCTCTCCGGCGCCCCCGGG
CTCGGCAAGACCACCCTCTCGATGATCATCGCCGCCGAGATGGGCGCCCCGATCCGCATCACCTCCGGCCCAGCCATCCA
GCACGCGGGCGATCTCGCCGCGATCCTCTCCTCCCTCACCGAGGGCGAGGTGCTCTTCCTGGACGAGATCCACCGTATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGGCCGGGCGCC
ACCGCCATCCCGCTGGAGCTGCCGCCGTTCACCCTGGTCGGCGCCACCACCCGGGCCGGGCTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGTCATATGGAGTTCTACGCCCCGGCCGAGCTGGAGCGCGTCATCCACCGCTCCGCCGGAC
TGCTGGAGGTCACCATCGAGCCCGTGGGCGCCACCGAGATCGCCGGGCGGTCCCGCGGCACCCCCCGGATCGCCAACCGT
CTGCTGCGCCGGGTGCGCGACTACGCCCAGGTCAAGGCCGACGGGGTGATCACCCGGGAGATCGCCGCCAGCGCCCTGGC
CGTCTACGACGTGGACGGACGCGGTCTGGACCGGCTGGACCGCGCGGTCCTCAGCGCCCTGCTCAAGCTGTTCGGCGGCG
GCCCGGTGGGGCTGTCCACCCTGGCGGTCGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCCTTCCTG
GTGCGGGAGGGGCTGCTGGCCCGTACGCCGCGGGGGCGCGTCGGCACCCCCGCGGCCTGGGCCCATCTGGGTCTCACCCC
GCCCCAGCAGGCCGGCGCGGGTGGTCAGACAGGTCTGTTCGAGGCATGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.495

90.884

0.486
  ruvB Synechocystis sp. PCC 6803

50.291

95.028

0.478
  ruvB Streptococcus pneumoniae TIGR4

51.057

91.436

0.467
  ruvB Streptococcus pneumoniae R6

51.057

91.436

0.467
  ruvB Streptococcus pneumoniae D39

51.057

91.436

0.467
  ruvB Helicobacter pylori 26695

48.923

89.779

0.439

Multiple sequence alignment