Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SSAL_RS05850 Genome accession   NC_017594
Coordinates   1274426..1276627 (-) Length   733 a.a.
NCBI ID   WP_045002085.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269426..1281627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS05825 (Ssal_01293) - 1270368..1271129 (-) 762 WP_004182656.1 hypothetical protein -
  SSAL_RS05830 (Ssal_01295) nth 1271257..1271901 (-) 645 WP_002884001.1 endonuclease III -
  SSAL_RS05835 (Ssal_01296) - 1271901..1272599 (-) 699 WP_014633243.1 DnaD domain-containing protein -
  SSAL_RS05840 (Ssal_01297) metA 1272672..1273616 (-) 945 WP_013990730.1 homoserine O-succinyltransferase -
  SSAL_RS05845 (Ssal_01298) - 1273789..1274307 (-) 519 WP_014633244.1 adenine phosphoribosyltransferase -
  SSAL_RS05850 (Ssal_01299) recJ 1274426..1276627 (-) 2202 WP_045002085.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SSAL_RS05855 (Ssal_01300) - 1276933..1277337 (-) 405 WP_045001800.1 GNAT family N-acetyltransferase -
  SSAL_RS05860 (Ssal_01301) - 1277339..1278049 (-) 711 WP_014633247.1 class I SAM-dependent methyltransferase -
  SSAL_RS05865 (Ssal_01302) - 1278061..1278828 (-) 768 WP_014633248.1 SDR family oxidoreductase -
  SSAL_RS05870 (Ssal_01303) rnz 1278828..1279757 (-) 930 WP_045001803.1 ribonuclease Z -
  SSAL_RS05875 (Ssal_01304) - 1279789..1280430 (-) 642 WP_045001806.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82142.34 Da        Isoelectric Point: 4.3248

>NTDB_id=40187 SSAL_RS05850 WP_045002085.1 1274426..1276627(-) (recJ) [Streptococcus salivarius 57.I]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTAEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDLTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNEIDTSAKNTLNLDEELQLSELGLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGVPTVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNNIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=40187 SSAL_RS05850 WP_045002085.1 1274426..1276627(-) (recJ) [Streptococcus salivarius 57.I]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
ACTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGCAGAAGCCCTTGAAGACTTTCTTAAGGCTG
ATTTATCACATCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGGATGACGTCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGTTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTTATTGTTACAGTGGATAATGGGGTTGCGGGAAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGCATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCGGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGATTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATCGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCTAACAACGATTTCCGAAGAAACGGTAGGTTTCAAACTAGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACCGGATTTGACGATGAGGAAGCTCAGGCCATTGCTTTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCTAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGTCTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCAATCAATATCTTCCATGCCCTTGATGAT
CACCGAGATATCTTTACTGCATTTGGAGGACACGCTGGAGCCGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGAGATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGCGAGCTTGGCTTGGATACTATTAAGAGTCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGGGCCCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTCCGTTCAAAAAATATGGCACTACCTGAAGGCGTACCAACGGTAGAAGAAGCAGCAGACAC
AGAACCTGCCGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAATATAAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGTTATAAACTGGATGAGCTTAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGACTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
CTGGGAACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.071

100

0.683
  recJ Bacillus subtilis subsp. subtilis str. 168

38.314

100

0.409

Multiple sequence alignment