Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GGC03_RS06075 Genome accession   NZ_CP046162
Coordinates   1341947..1342534 (+) Length   195 a.a.
NCBI ID   WP_029236136.1    Uniprot ID   A0A097QL99
Organism   Vibrio sp. THAF191c     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336947..1347534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC03_RS06055 (GGC03_06135) panP 1337329..1338975 (-) 1647 WP_006959036.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  GGC03_RS06060 (GGC03_06140) - 1339117..1339632 (-) 516 WP_006959035.1 hypothetical protein -
  GGC03_RS06065 (GGC03_06145) - 1339744..1340649 (-) 906 WP_006959034.1 lysine exporter LysO family protein -
  GGC03_RS06070 (GGC03_06150) - 1340680..1341600 (-) 921 WP_006959033.1 HDOD domain-containing protein -
  GGC03_RS06075 (GGC03_06155) tfoX 1341947..1342534 (+) 588 WP_029236136.1 TfoX/Sxy family DNA transformation protein Regulator
  GGC03_RS06080 (GGC03_06160) - 1342622..1343176 (-) 555 WP_006959030.1 hypothetical protein -
  GGC03_RS06085 (GGC03_06165) - 1343348..1343845 (-) 498 WP_006959028.1 response regulator -
  GGC03_RS06090 (GGC03_06170) - 1343855..1345795 (-) 1941 WP_154741287.1 ATP-binding protein -
  GGC03_RS06095 (GGC03_06175) - 1345974..1347242 (+) 1269 WP_006959021.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22376.83 Da        Isoelectric Point: 9.7904

>NTDB_id=401737 GGC03_RS06075 WP_029236136.1 1341947..1342534(+) (tfoX) [Vibrio sp. THAF191c]
MDMTEQQFINYVNKFGSFQKRSMFGGTGLFKQDAMFALMSADKVFIRGGDYLDDKLTDLGCIKYRHVKKQTTATVNYYDI
THLFNNKNELLDEIVENSIKFSVSQRHYKKSSASRRLRDLPNMQLTLERMVKKAGVVDVDTFLELGAPEVFSKVKATYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKRQLLASCA

Nucleotide


Download         Length: 588 bp        

>NTDB_id=401737 GGC03_RS06075 WP_029236136.1 1341947..1342534(+) (tfoX) [Vibrio sp. THAF191c]
ATGGATATGACAGAGCAACAATTTATTAATTACGTTAACAAGTTTGGTAGTTTCCAAAAACGTTCAATGTTTGGTGGAAC
GGGTTTATTCAAACAAGACGCAATGTTTGCCCTAATGAGTGCTGACAAAGTGTTTATTCGAGGTGGTGACTATTTAGATG
ACAAATTGACGGATTTGGGCTGTATCAAGTACCGTCATGTTAAAAAACAAACGACTGCGACGGTGAATTATTACGATATT
ACTCATCTATTTAATAATAAAAATGAGCTTTTAGATGAGATTGTTGAGAATTCGATTAAGTTTTCGGTGTCTCAGCGTCA
CTATAAGAAGTCGTCAGCAAGTCGTCGTTTAAGAGATTTGCCGAACATGCAGCTCACACTAGAGCGCATGGTGAAAAAAG
CGGGTGTTGTTGATGTTGACACCTTCTTGGAGCTCGGTGCACCTGAAGTGTTCTCTAAAGTGAAAGCGACATACGGCAAT
GATGTCGATGTTAAGCTACTTTGGAAATTTGCTGGTGCCATTGATGGTGTACATTGGAAGCTTATCCAAGAACCGCGTAA
ACGTCAGCTTCTAGCGAGTTGTGCGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QL99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

70.619

99.487

0.703
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

71.354

98.462

0.703
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

71.354

98.462

0.703
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

71.354

98.462

0.703
  tfoX Vibrio cholerae strain A1552

71.354

98.462

0.703
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

71.354

98.462

0.703
  tfoX Vibrio parahaemolyticus RIMD 2210633

69.588

99.487

0.692
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585

Multiple sequence alignment