Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GFS31_RS01440 Genome accession   NZ_CP046155
Coordinates   326697..327059 (-) Length   120 a.a.
NCBI ID   WP_198806548.1    Uniprot ID   A0A7T5JDK2
Organism   Leptolyngbya sp. BL0902     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321697..332059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFS31_RS01425 (GFS31_03080) - 322234..323526 (-) 1293 WP_198806545.1 tetratricopeptide repeat protein -
  GFS31_RS01430 (GFS31_03090) - 324210..325016 (+) 807 WP_198806546.1 alpha/beta fold hydrolase -
  GFS31_RS01435 (GFS31_03100) - 325084..326700 (+) 1617 WP_225907719.1 diguanylate cyclase domain-containing protein -
  GFS31_RS01440 (GFS31_03110) pilH 326697..327059 (-) 363 WP_198806548.1 response regulator transcription factor Machinery gene
  GFS31_RS01445 (GFS31_03120) - 327371..328363 (+) 993 WP_317135057.1 RluA family pseudouridine synthase -
  GFS31_RS01450 (GFS31_03130) ilvA 328567..330078 (+) 1512 WP_198806549.1 threonine ammonia-lyase, biosynthetic -
  GFS31_RS01455 (GFS31_03150) - 330244..331617 (+) 1374 WP_198806550.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13320.51 Da        Isoelectric Point: 4.6050

>NTDB_id=401700 GFS31_RS01440 WP_198806548.1 326697..327059(-) (pilH) [Leptolyngbya sp. BL0902]
MSTVLIVDDSSTLREMIAGLLLKAGLTVLEAKDGVEAQAMIQASPPDLVVLDIVMPNMNGYELCRWIKNNATTQSIPVII
CSSKGEEFDRYWGMKQGADAYITKPFRPDDMISTVRQLLR

Nucleotide


Download         Length: 363 bp        

>NTDB_id=401700 GFS31_RS01440 WP_198806548.1 326697..327059(-) (pilH) [Leptolyngbya sp. BL0902]
ATGAGTACAGTCTTGATTGTGGATGACAGTTCAACTCTCCGGGAAATGATCGCCGGACTTTTGCTCAAGGCTGGCTTAAC
AGTCCTAGAGGCCAAAGATGGAGTTGAGGCCCAGGCGATGATCCAAGCCTCCCCGCCCGATTTGGTGGTGCTGGATATCG
TCATGCCCAATATGAACGGCTATGAGCTCTGCCGCTGGATCAAAAATAACGCCACCACCCAATCCATTCCGGTGATTATC
TGCTCCTCCAAGGGCGAGGAATTTGACCGCTACTGGGGGATGAAACAGGGGGCCGATGCCTACATCACCAAGCCCTTCCG
CCCCGACGACATGATCAGCACCGTGCGGCAACTGCTGCGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5JDK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

62.5

100

0.625
  pilG Acinetobacter baumannii strain A118

42.982

95

0.408
  pilL-C Synechocystis sp. PCC 6803

40.678

98.333

0.4
  micA Streptococcus pneumoniae Cp1015

36.667

100

0.367

Multiple sequence alignment