Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GKO49_RS04230 Genome accession   NZ_CP046148
Coordinates   892394..893452 (-) Length   352 a.a.
NCBI ID   WP_075250468.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain ITCCBB0002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887394..898452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKO49_RS04205 (GKO49_04205) - 887606..888404 (+) 799 WP_094187728.1 IS5 family transposase -
  GKO49_RS04210 (GKO49_04210) - 888475..890424 (-) 1950 WP_011407796.1 type IV pilus secretin PilQ family protein -
  GKO49_RS04215 (GKO49_04215) - 890444..890977 (-) 534 WP_011257996.1 pilus assembly protein PilP -
  GKO49_RS04220 (GKO49_04220) - 890974..891639 (-) 666 WP_011257995.1 type 4a pilus biogenesis protein PilO -
  GKO49_RS04225 (GKO49_04225) - 891636..892394 (-) 759 WP_011257994.1 PilN domain-containing protein -
  GKO49_RS04230 (GKO49_04230) comM 892394..893452 (-) 1059 WP_075250468.1 pilus assembly protein PilM Machinery gene
  GKO49_RS04235 (GKO49_04235) - 893668..896097 (+) 2430 WP_011257992.1 penicillin-binding protein 1A -
  GKO49_RS04240 (GKO49_04240) - 896407..897057 (+) 651 WP_011407794.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37726.44 Da        Isoelectric Point: 4.3924

>NTDB_id=401683 GKO49_RS04230 WP_075250468.1 892394..893452(-) (comM) [Xanthomonas oryzae pv. oryzae strain ITCCBB0002]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLAPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=401683 GKO49_RS04230 WP_075250468.1 892394..893452(-) (comM) [Xanthomonas oryzae pv. oryzae strain ITCCBB0002]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGCTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment