Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GKC68_RS21100 Genome accession   NZ_CP046137
Coordinates   4397855..4398400 (-) Length   181 a.a.
NCBI ID   WP_342656477.1    Uniprot ID   -
Organism   Pantoea sp. RSPAM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4392855..4403400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC68_RS21080 (GKC68_20975) - 4393999..4394394 (+) 396 WP_014606933.1 transposase -
  GKC68_RS21085 (GKC68_20980) - 4395616..4396473 (-) 858 WP_342656910.1 AraC family transcriptional regulator -
  GKC68_RS21090 (GKC68_20985) - 4396573..4397091 (+) 519 WP_014606935.1 isochorismatase family protein -
  GKC68_RS21095 (GKC68_20990) - 4397188..4397760 (+) 573 WP_342656476.1 DUF1349 domain-containing protein -
  GKC68_RS21100 (GKC68_20995) ssb 4397855..4398400 (-) 546 WP_342656477.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GKC68_RS21105 (GKC68_21000) uvrA 4398622..4401450 (+) 2829 WP_110983577.1 excinuclease ABC subunit UvrA -
  GKC68_RS21110 (GKC68_21005) - 4401963..4403027 (+) 1065 WP_028722999.1 NAD(P)-dependent alcohol dehydrogenase -
  GKC68_RS21115 (GKC68_21010) - 4403066..4403389 (-) 324 WP_014606938.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19581.49 Da        Isoelectric Point: 5.2456

>NTDB_id=401568 GKC68_RS21100 WP_342656477.1 4397855..4398400(-) (ssb) [Pantoea sp. RSPAM1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPAGNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=401568 GKC68_RS21100 WP_342656477.1 4397855..4398400(-) (ssb) [Pantoea sp. RSPAM1]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGTTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAATAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCGGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464

Multiple sequence alignment