Detailed information NTG0401467

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: GKC27_RS17305
• Genome accession: NZ_CP046130
• Coordinates: 3323215..3324390 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain DSM 27
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3318215..3329390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC27_RS17275 (GKC27_17085)	-	3318383..3318802 (-)	420	WP_003212865.1	TIGR03826 family flagellar region protein	-
GKC27_RS17280 (GKC27_17090)	comFC	3318859..3319545 (-)	687	WP_003212791.1	ComF family protein	Machinery gene
GKC27_RS17285 (GKC27_17095)	-	3319542..3319835 (-)	294	WP_003213271.1	competence protein ComFB	-
GKC27_RS17290 (GKC27_17100)	comFA	3319902..3321281 (-)	1380	WP_269457875.1	DEAD/DEAH box helicase	Machinery gene
GKC27_RS17295 (GKC27_17105)	-	3321401..3322243 (-)	843	WP_003213402.1	DegV family protein	-
GKC27_RS17300 (GKC27_17110)	degU	3322461..3323150 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
GKC27_RS17305 (GKC27_17115)	degS	3323215..3324390 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
GKC27_RS17310 (GKC27_17120)	-	3324612..3325280 (+)	669	WP_003212936.1	YigZ family protein	-
GKC27_RS17315 (GKC27_17125)	-	3325265..3326341 (+)	1077	WP_003213564.1	LCP family protein	-
GKC27_RS17320 (GKC27_17130)	-	3326377..3327444 (-)	1068	WP_003212692.1	MraY family glycosyltransferase	-
GKC27_RS17325 (GKC27_17135)	-	3327576..3328772 (-)	1197	WP_342688360.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=401467 GKC27_RS17305 WP_003213166.1 3323215..3324390(-) (degS) [Bacillus pumilus strain DSM 27]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=401467 GKC27_RS17305 WP_003213166.1 3323215..3324390(-) (degS) [Bacillus pumilus strain DSM 27]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAACAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACTATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCACGACGGTCCGGCCCAAATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGTATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCTCAAGAAGCTGTCACAAATTCACTGAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTC
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTTGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841